BAC Information

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BAC

Clone NameMSMg01-513D14
Chromosome9 (Build37)
Map Location 121,908,778 - 122,079,857
singlet/doubletdoublet
Overlap geneLOC100040121, Snrk
Upstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492
Downstream geneTmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513D14.T7 (MSMg01no513_d14.b1)MSMg01-513D14.TJ (MSMg01no513_d14.g1)
ACCAG585995AG585996
length750759
length of high quality
(start - end)		652 (45 - 696)588 (68 - 655)
definitionCHROMAT_FILE: MSMg01no513_d14.b1 PHD_FILE: MSMg01no513_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:38 2005CHROMAT_FILE: MSMg01no513_d14.g1 PHD_FILE: MSMg01no513_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,908,778 - 121,909,417)(122,079,270 - 122,079,857)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGNGGAATTCTCA
ATTTCCCCAAGGGCAGCTTGTTAGAGCAGAGATGTCGCTGCTTCCCTGGG
GTGGGAAGGAATCCAACATTAGCTGCCTGTCCCCTGTGCTTTCTCCTCAA
AGGCTCGCACAGAGCTCTGCCCATGCTCCAGTCTCAGTTCCAAGTGTTCG
CGGCCCAGCTAACATATGTGAGGCTACATGAAACCTCCCTGAACGAATCC
TCTATCGCTCCCGTTTGCTGTGTCATTCTTCAAAGTTGGATTTATTGAAA
GGTGGCAACAGGGAGCTATATCTAAGGAGTAGGAAGTGAGGCAGAAAGGG
AAGGCAGCACAGGGCCTGTTGCCATCTCTGGGACACACAGTGGTTCAGCT
CAGAGCTCTGGAGGTGACAGAAGAATGCTCTTCAGCTGTTCACTTAATGA
GTGGCAGGGGTTAGGGCTATTTCTGGGGGCATTAGCACTTCCTTCTGCTC
CACATGTACTGATTGAAAATCACAGAGATACAGGTGTTGAAGATCCCAGT
GTTTGCCTTGGGGAGTCTTCAATATCCTAGGAGGCCCTGGGGAGGGAGGC
GGCTGGGAGCCAACAGCACCTGCTGCACTGGCTGAAGTGTCTCCACTACT
GAGTCCCTTTGCAGGGAGCCCTGTGCCACACACTGTAGCTGCTGCAAAGA
ATAAGGCAGATACTCTGTGACTGAGCTTGGGATGTGGCTGGGAAGACAGG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGTTCGTAGAACTTCTGCCGTTGCCATTTGAG
GAGCGAGTACCACCAGGACAGGAAGAATTCCAAAGGCTTGGGAGAGTGAC
ATGCTGGCTAGATGTATCTATGTATTGAGTCAGAGGTGGTGGGTATGTGT
TCCTGGGGGAGATATAGGTATGTCTGGAAGGCTTGCTGGCCTATGGTCTT
GAGTTTGCACCAGTTAGTTAAAGTCAACGTTGACTCATCTCTTTGAGGCA
GAGAGGAAGAGGAGTCTAGAAAGATGGCATATCTCTAGCTGGAAGAACCC
AACTTAGCAAATTCTCTCACACAACTGATGTTGGACCCTGGGCTGTGACT
GCCGAAGACCAGTGGGAAAGCAGAGGAAAAAGCAAGCTGATCTTGCCACA
AGACCTTGTTTTGGATGTGTGAAAATGGATTATGGAAATAGTTACACAAA
CCATTGAATGCTCTAAAACTGACTGAATTGTGTTACAGTCAAATAGTGTA
CCACGTGAGATGTCTCTCAAGTCATTCCAAGATCTGTCTTCTGGATTTTG
CAAATGAAGGTTATGCTGACCAACAAAGTCACCGAGCCAGGATGCAGCAG
TAAGAGGACCTAGTGTGCCAGCAATGTGAGGAAGTGGACTGCAGGTGGGG
CAGCTTTTGGCTAGAGTGGCTGCCAATGACTACGACAGGCCTCATGGCTG
CCAGGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_d14.b1 MSMg01no513_d14.b1 CHROMAT_FILE:
MSMg01no513_d14.b1 PHD_FILE: MSMg01no513_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:38 2005
         (652 letters)



>mm_chr9_121908566_121909617
          Length = 1052

 Score = 1207 bits (624), Expect = 0.0
 Identities = 636/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  ccaagggcagcttgttagagcagagatgtcgctgcttccctggggtgggaaggaatccaa 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ccaagggcagcttgttagagcagagatgtcgctgcttccctggggtgggaaggaatccaa 272

                                                                       
Query: 73  cattagctgcctgtcccctgtgctttctcctcaaaggctcgcacagagctctgcccatgc 132
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 273 cattagctgcctgtcccctgtgctttctcctcaaaggctcgtacagagctctgcccatgc 332

                                                                       
Query: 133 tccagtctcagttccaagtgttcgcggcccagctaacatatgtgaggctacatgaaacct 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tccagtctcagttccaagtgttcgcggcccagctaacatatgtgaggctacatgaaacct 392

                                                                       
Query: 193 ccctgaacgaatcctctatcgctcccgtttgctgtgtcattcttcaaagttggatttatt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccctgaacgaatcctctatcgctcccgtttgctgtgtcattcttcaaagttggatttatt 452

                                                                       
Query: 253 gaaaggtggcaacagggagctatatctaaggagtaggaagtgaggcagaaagggaaggca 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaaaggtggcaacagggagctatatctaaggagtaggaagtgaggcagaaagggaaggca 512

                                                                       
Query: 313 gcacagggcctgttgccatctctgggacacacagtggttcagctcagagctctggaggtg 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gcacagggcctgttgccatctctgggacacacagtggttcagctcagagctctggaggtg 572

                                                                       
Query: 373 acagaagaatgctcttcagctgttcacttaatgagtggcaggggttagggctatttctgg 432
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 573 acagaagaatgctcttcagctgttcacttaatgagtggcatgggttagggctatttctgg 632

                                                                       
Query: 433 gggcattagcacttccttctgctccacatgtactgattgaaaatcacagagatacaggtg 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gggcattagcacttccttctgctccacatgtactgattgaaaatcacagagatacaggtg 692

                                                                       
Query: 493 ttgaagatcccagtgtttgccttggggagtcttcaatatcctaggaggccctggggaggg 552
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttgaagatcccggtgtttgccttggggagtcttcaatatcctaggaggccctggggaggg 752

                                                                       
Query: 553 aggcggctgggagccaacagcacctgctgcactggctgaagtgtctccactactgagtcc 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aggcggctgggagccaacagcacctgctgcactggctgaagtgtctccactactgagtcc 812

                                                   
Query: 613 ctttgcagggagccctgtgccacacactgtagctgctgca 652
           ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 813 ctttgcagggatccctgtgccacacactgtagctgctgca 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_d14.g1 MSMg01no513_d14.g1 CHROMAT_FILE:
MSMg01no513_d14.g1 PHD_FILE: MSMg01no513_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:39 2005
         (588 letters)



>mm_chr9_122079070_122080057
          Length = 988

 Score = 1129 bits (584), Expect = 0.0
 Identities = 587/588 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttcgtagaacttctgccgttgccatttgaggagcgagtaccaccaggacaggaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgttcgtagaacttctgccgttgccatttgaggagcgagtaccaccaggacaggaagaa 729

                                                                       
Query: 61  ttccaaaggcttgggagagtgacatgctggctagatgtatctatgtattgagtcagaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttccaaaggcttgggagagtgacatgctggctagatgtatctatgtattgagtcagaggt 669

                                                                       
Query: 121 ggtgggtatgtgttcctgggggagatataggtatgtctggaaggcttgctggcctatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggtgggtatgtgttcctgggggagatataggtatgtctggaaggcttgctggcctatggt 609

                                                                       
Query: 181 cttgagtttgcaccagttagttaaagtcaacgttgactcatctctttgaggcagagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttgagtttgcaccagttagttaaagtcaacgttgactcatctctttgaggcagagagga 549

                                                                       
Query: 241 agaggagtctagaaagatggcatatctctagctggaagaacccaacttagcaaattctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agaggagtctagaaagatggcatatctctagctggaagaacccaacttagcaaattctct 489

                                                                       
Query: 301 cacacaactgatgttggaccctgggctgtgactgccgaagaccagtgggaaagcagagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cacacaactgatgttggaccctgggctgtgactgccgaagaccagtgggaaagcagagga 429

                                                                       
Query: 361 aaaagcaagctgatcttgccacaagaccttgttttggatgtgtgaaaatggattatggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaagcaagctgatcttgccacaagaccttgttttggatgtgtgaaaatggattatggaa 369

                                                                       
Query: 421 atagttacacaaaccattgaatgctctaaaactgactgaattgtgttacagtcaaatagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atagttacacaaaccattgaatgctctaaaactgactgaattgtgttacagtcaaatagt 309

                                                                       
Query: 481 gtaccacgtgagatgtctctcaagtcattccaagatctgtcttctggattttgcaaatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtaccacgtgagatgtctctcaagtcattccaagatctgtcttctggattttgcaaatga 249

                                                           
Query: 541 aggttatgctgaccaacaaagtcaccgagccaggatgcagcagtaaga 588
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 248 aggttatgctgaccagcaaagtcaccgagccaggatgcagcagtaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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