XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
CTTCTTTGCTTCTACTTCCCAAGTGCTGAGATTATATCCTGTAATGCAAC
CGAGTTCCCTTATCTGCTATGGGGGTCGTGGTTGCTAGAAGACCAGGAAC
CCCTCAGACCCAGACCTTAACCTGCAGCAGATTCAAGTCTCTACAGGGGG
CAAAGGTCAGGAAGTGGTCTACCCTCCCTGGCTTTTGGTGCTTCTCGGAC
ATCAAGACATCCTGCAGGAGTGAGGTGACTGAAGGCAATGGGACAAAAAA
GAAAAAGAAAAAAACAGACTAGAAAGTCTCAGACTCTGCAGGCTATGAGC
TGTGTAGCTGTGTGCCGGGGTGAATTAAAACAAAATGGTAACTCATCACC
AACCCCTCCCTCACAAGGGCATTGGCAGATGGGTTTCAGAGGGACCAAAC
ATATAATGGAAAACTAAGAAAACACAGCCCACTTCCTGAGGCTGGAGAAG
CATAAAGACCATGAGACCCTCAAGTGGTGACTTAGATGGGACCAAAGTGG
ACACCCCCTCGGGACGAGCCAGCTTGCAGCAAAGTGATGAGAAGTCACTA
TCTTGTCAGAAGTAGGGACACCAAACCCACCTAAAAGAAAGAGCTCAGTA
GCTCTCAGCACCTCTTAGCCACACTCCCCAATACTGTATGTAGACACGGG
TTCACAACAGAGCTGGTGGCCAAGTCACGTCTGCTTCCATTGCCTGGAAG
AGTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGCGGTAATGAA
GGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAAA
ACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAC
GCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAA
AGTGGGGAATAGCTTTACAAGGTACGCCTGGCCTTGAACTTTCTAACGAA
ATTCAAGACAGTCTATCAGAAGTAAAGTGGGGAATAGCTTTACAAGGTAT
GCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAA
AGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTG
TTAGGAGCCTTTTTGTTCTTTTTCACATGTTATCAAGTGATTAAGATAGG
GCTGAAAATTCTGGATGAAATTCAGGACAATCTATCAGAAGTAAAGCGGG
GAGAGAGAGTAGGAGCAAAGAGAAAATATGGTACACAAAATAAGTATACA
GGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTCAGGTAAGAA
TACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAG
ATCAATTAGAGAAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAAAGGCT
ATTAGG

Query= MSMg01no513_d19.b1 MSMg01no513_d19.b1 CHROMAT_FILE:
MSMg01no513_d19.b1 PHD_FILE: MSMg01no513_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:39 2005
         (668 letters)



>mm_chr9_48548844_48549911
          Length = 1068

 Score = 1268 bits (656), Expect = 0.0
 Identities = 662/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgacttctttgcttctacttcccaagtgctgagattatatcctgtaatgcaac 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgacccctttgcttctacttcccaagtgctgagattatatcctgtaatgcaac 264

                                                                       
Query: 65  cgagttcccttatctgctatgggggtcgtggttgctagaagaccaggaacccctcagacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgagttcccttatctgctatgggggtcgtggttgctagaagaccaggaacccctcagacc 324

                                                                       
Query: 125 cagaccttaacctgcagcagattcaagtctctacagggggcaaaggtcaggaagtggtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaccttaacctgcagcagattcaagtctctacagggggcaaaggtcaggaagtggtct 384

                                                                       
Query: 185 accctccctggcttttggtgcttctcggacatcaagacatcctgcaggagtgaggtgact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accctccctggcttttggtgcttctcggacatcaagacatcctgcaggagtgaggtgact 444

                                                                       
Query: 245 gaaggcaatgggacaaaaaagaaaaagaaaaaaacagactagaaagtctcagactctgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaggcaatgggacaaaaaagaaaaagaaaaaaacagactagaaagtctcagactctgca 504

                                                                       
Query: 305 ggctatgagctgtgtagctgtgtgccggggtgaattaaaacaaaatggtaactcatcacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctatgagctgtgtagctgtgtgccggggtgaattaaaacaaaatggtaactcatcacc 564

                                                                       
Query: 365 aacccctccctcacaagggcattggcagatgggtttcagagggaccaaacatataatgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacccctccctcacaagggcattggcagatgggtttcagagggaccaaacatataatgga 624

                                                                       
Query: 425 aaactaagaaaacacagcccacttcctgaggctggagaagcataaagaccatgagaccct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaactaagaaaacacagcccacttcctgaggctggagaagcataaagaccatgagaccct 684

                                                                       
Query: 485 caagtggtgacttagatgggaccaaagtggacaccccctcgggacgagccagcttgcagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caagtggtgacttagatgggaccaaagtggacaccccctcgggacgagccagcttgcagc 744

                                                                       
Query: 545 aaagtgatgagaagtcactatcttgtcagaagtagggacaccaaacccacctaaaagaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagtgatgagaagtcactatcttgtcagaagtagggacaccaaacccacctaaaagaaa 804

                                                                       
Query: 605 gagctcagtagctctcagcacctcttagccacactccccaatactgtatgtagacacggg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gagctcagtagctctcagcacctcttagccacactccccaatactgtatgtagacacggg 864

               
Query: 665 ttca 668
           ||||
Sbjct: 865 ttca 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)