BAC Information

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BAC

Clone NameMSMg01-513H11
Chromosome9 (Build37)
Map Location 115,019,897 - 115,198,840
singlet/doubletdoublet
Overlap geneOsbpl10, LOC100043812, Stt3b
Upstream geneEG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813
Downstream geneLOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513H11.T7 (MSMg01no513_h11.b1)MSMg01-513H11.TJ (MSMg01no513_h11.g1)
ACCAG586180AG586181
length765767
length of high quality
(start - end)		624 (38 - 661)580 (68 - 647)
definitionCHROMAT_FILE: MSMg01no513_h11.b1 PHD_FILE: MSMg01no513_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:58 2005CHROMAT_FILE: MSMg01no513_h11.g1 PHD_FILE: MSMg01no513_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,198,220 - 115,198,840)(115,019,897 - 115,020,476)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
CTTATCATTTTTGCTATAGAGATGTATGCACAAGAGAGCAAACTTTCTGT
GTGAGAATGGTCTGTGTCCTGTCCTTCTGCTGCACTCTGCGCCAAAGCCA
TTGCTGTTCAGGAGTGACACTTGTAAGGAAGCAGACACTTTTATTATTAG
CTGTTCTCCCAAAGTAGTTCTTAATACTGGGTAGCACGCTTGTCTTTGGT
GGAAGGAGAGGCTGAGCCTTGTTGAGAGAAAGGGAGAATTGCTCTTATGC
TCGTGCGTATACATCCCTTCCTAAGACAAGAAGAAGAAGAGCCTAGCACA
GTGGGACAGACTAGACATCAGTTCACTGAAACTAGTTCTGTCAAGATTGA
CAGAAGTTGACCTTGGGTCCAGGTAGGGCAGAGATGGAGACACACTGCTC
TGTTTTTCTTTTATGGGAGTAACACTTGGCTTGTAAGAAAGCATTTATAA
ACTTGATAAGGCCTTTAGGAGGTAGTGATTGTCACCTATCAAGCAGGCCT
GATCAAGGTTTGTTAGGGGCCATGGTTACAGTAACTGTTAAAGAGTTTAA
ATCTGAAGCAACCCAGCCATTTTGCTGGACTCTTCTGTATTGGTTCCAAA
GTAACTTAACAAAAGGTTCCATGTTACTCCTTTCTTTCTTTTGAGCCAGG
GTCTCACTATGTAATCCTGGCTGTCCTGGAACTCACCCTGGTATCCAGGC
TCGCCTCCAATTCAA

TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATTTAAAAATATTTTTAGGTAAATTCTATGTG
TATGGGTATTTTGCTTATGTGTGTGCAGCATGTGTGTGTAGTGCCTATGG
AGGCCAGAAGGGGGCGTCAGATTGCCTGGAACTGGAATTACAGACCATCC
TGAGCAGCCCTGTGGGTGATGAGAACGATACTTGGGTCTTTCAGAGGAGC
AACAAGTGCTCTTAACCATTTTAATCTTCAGAGAGAATGCCCACTGTGAA
ACAGACACCCTGATGTGTAGGCAAACGTGACTTTTAGTTTAATTGTATTA
TTACATTGGTTGATATAATGGGTGCTGTGTCTATTTGCTTTTTTCCCCCA
TAGATCCTTTTTCAACATACCATCACAGACTTATATCAAATAGAACAGTA
CGCTGCTCCAGGGTTCTGCATCATGGACCAGGACAGCTTTAGTAGTTTGC
ATCTTAATTTTTTTCATTGAAATTTTCATTCAATCTGTTTTTTTTTCTCC
TCAGCTTTTGAGGTGTGTATATGTGTATAGTTTTATTTTTAGAATTTTTA
GATGTATTTTATGTGTATGGGTCTTTTGCTTACACGTATGTATGTGCAGC
AGGTGTGTGCATACATGAACTTAGAGGCATATATCACAACATCTGGTGGA
TTTGATGCTGGGGATGGAACCCAGGGTTCTTGCTGGGGAAGATTCTGGCA
ACAAGTAGCATCCCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_h11.b1 MSMg01no513_h11.b1 CHROMAT_FILE:
MSMg01no513_h11.b1 PHD_FILE: MSMg01no513_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:58 2005
         (624 letters)



>mm_chr9_115198017_115199040
          Length = 1024

 Score = 1185 bits (613), Expect = 0.0
 Identities = 619/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgcttatcatttttgctatagagatgtatgcacaagagagcaaactttctgt 63
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggaattcctgccaatcatttttgctatagagatgtatgcacaagagagcaaactttctgt 765

                                                                       
Query: 64  gtgagaatggtctgtgtcctgtccttctgctgcactctgcgccaaagccattgctgttca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gtgagaatggtctgtgtcctgtccttctgctgcactctgcgccaaagccattgctgttca 705

                                                                       
Query: 124 ggagtgacacttgtaaggaagcagacacttttattattagctgttctcccaaagtagttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggagtgacacttgtaaggaagcagacacttttattattagctgttctcccaaagtagttc 645

                                                                       
Query: 184 ttaatactgggtagcacgcttgtctttggtggaaggagaggctgagccttgttgagagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttaatactgggtagcacgcttgtctttggtggaaggagaggctgagccttgttgagagaa 585

                                                                       
Query: 244 agggagaattgctcttatgctcgtgcgtatacatcccttcctaagacaagaagaagaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agggagaattgctcttatgctcgtgcgtatacatcccttcctaagacaagaagaagaaga 525

                                                                       
Query: 304 gcctagcacagtgggacagactagacatcagttcactgaaactagttctgtcaagattga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gcctagcacagtgggacagactagacatcagttcactgaaactagttctgtcaagattga 465

                                                                       
Query: 364 cagaagttgaccttgggtccaggtagggcagagatggagacacactgctctgtttttctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cagaagttgaccttgggtccaggtagggcagagatggagacacactgctctgtttttctt 405

                                                                       
Query: 424 ttatgggagtaacacttggcttgtaagaaagcatttataaacttgataaggcctttagga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttatgggagtaacacttggcttgtaagaaagcatttataaacttgataaggcctttagga 345

                                                                       
Query: 484 ggtagtgattgtcacctatcaagcaggcctgatcaaggtttgttaggggccatggttaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggtagtgattgtcacctatcaagcaggcctgatcaaggtttgttaggggccatggttaca 285

                                                                       
Query: 544 gtaactgttaaagagtttaaatctgaagcaacccagccattttgctggactcttctgtat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtaactgttaaagagtttaaatctgaagcaacccagccattttgctggactcttctgtat 225

                                
Query: 604 tggttccaaagtaacttaaca 624
           |||||||||||||||||||||
Sbjct: 224 tggttccaaagtaacttaaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_h11.g1 MSMg01no513_h11.g1 CHROMAT_FILE:
MSMg01no513_h11.g1 PHD_FILE: MSMg01no513_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:58 2005
         (580 letters)



>mm_chr9_115019697_115020676
          Length = 980

 Score = 1122 bits (580), Expect = 0.0
 Identities = 580/580 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttaaaaatatttttaggtaaattctatgtgtatgggtattttgcttatgtgtgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttaaaaatatttttaggtaaattctatgtgtatgggtattttgcttatgtgtgtgca 260

                                                                       
Query: 61  gcatgtgtgtgtagtgcctatggaggccagaagggggcgtcagattgcctggaactggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgtgtgtgtagtgcctatggaggccagaagggggcgtcagattgcctggaactggaa 320

                                                                       
Query: 121 ttacagaccatcctgagcagccctgtgggtgatgagaacgatacttgggtctttcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacagaccatcctgagcagccctgtgggtgatgagaacgatacttgggtctttcagagg 380

                                                                       
Query: 181 agcaacaagtgctcttaaccattttaatcttcagagagaatgcccactgtgaaacagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaacaagtgctcttaaccattttaatcttcagagagaatgcccactgtgaaacagaca 440

                                                                       
Query: 241 ccctgatgtgtaggcaaacgtgacttttagtttaattgtattattacattggttgatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgatgtgtaggcaaacgtgacttttagtttaattgtattattacattggttgatata 500

                                                                       
Query: 301 atgggtgctgtgtctatttgcttttttcccccatagatcctttttcaacataccatcaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgggtgctgtgtctatttgcttttttcccccatagatcctttttcaacataccatcaca 560

                                                                       
Query: 361 gacttatatcaaatagaacagtacgctgctccagggttctgcatcatggaccaggacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacttatatcaaatagaacagtacgctgctccagggttctgcatcatggaccaggacagc 620

                                                                       
Query: 421 tttagtagtttgcatcttaatttttttcattgaaattttcattcaatctgtttttttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagtagtttgcatcttaatttttttcattgaaattttcattcaatctgtttttttttc 680

                                                                       
Query: 481 tcctcagcttttgaggtgtgtatatgtgtatagttttatttttagaatttttagatgtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctcagcttttgaggtgtgtatatgtgtatagttttatttttagaatttttagatgtat 740

                                                   
Query: 541 tttatgtgtatgggtcttttgcttacacgtatgtatgtgc 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttatgtgtatgggtcttttgcttacacgtatgtatgtgc 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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