Query= MSMg01no513_j22.b1 MSMg01no513_j22.b1 CHROMAT_FILE:
MSMg01no513_j22.b1 PHD_FILE: MSMg01no513_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:10 2005
(644 letters)
>mm_chr9_31163160_31164203
Length = 1044
Score = 1230 bits (636), Expect = 0.0
Identities = 639/640 (99%)
Strand = Plus / Plus
Query: 5 gaattcattgactttgttttcttatcccttctgtctgtgacttttacaatagagaatatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgactttgttttcttatcccttctgtctgtgacttttacaatagagaatatg 264
Query: 65 tattacctagaatatgaaatcatttgaaatgtccaagatgtaaaatagtctgtcagcttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattacctagaatatgaaatcatttgaaatgtccaagatgtaaaatagtctgtcagcttg 324
Query: 125 catggtagatcgggcctcctcggggactgattaggcagtgaaaagttgtgtggtagaatt 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 catggtagatcgggcctcctcggggactgattaggcagtgaaaaggtgtgtggtagaatt 384
Query: 185 ctttgcctttatatatgtgagtatactgctgctgtcttcagacaccccagaagagggtac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttgcctttatatatgtgagtatactgctgctgtcttcagacaccccagaagagggtac 444
Query: 245 aggatcccattacagatggttgggagccaccatgtggttgctgggaattgaactcaggac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggatcccattacagatggttgggagccaccatgtggttgctgggaattgaactcaggac 504
Query: 305 ctctggtagagcagtcagtgctcttaaccactgagccatctctccagcctaaattctctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctggtagagcagtcagtgctcttaaccactgagccatctctccagcctaaattctctg 564
Query: 365 cttttttattgcagttacacaagacagggctgctgcctatggtgtgtatcttttacattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttttttattgcagttacacaagacagggctgctgcctatggtgtgtatcttttacattt 624
Query: 425 tctgtgaagggtgtttttacagttactatctgtcttagagttgccattgctgtgaaaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgtgaagggtgtttttacagttactatctgtcttagagttgccattgctgtgaaaaga 684
Query: 485 caccatgaccaaggcaactcttataaaagacaacatttccttggggctggtttacagtcg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caccatgaccaaggcaactcttataaaagacaacatttccttggggctggtttacagtcg 744
Query: 545 gaggatcagtctgttatcatggtggaaagcatggctgtgtccaggcaggcatggtgctgg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaggatcagtctgttatcatggtggaaagcatggctgtgtccaggcaggcatggtgctgg 804
Query: 605 aggagctgagaggtctacttcttgttctgaaggcaaacaa 644
||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggagctgagaggtctacttcttgttctgaaggcaaacaa 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_j22.g1 MSMg01no513_j22.g1 CHROMAT_FILE:
MSMg01no513_j22.g1 PHD_FILE: MSMg01no513_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:10 2005
(628 letters)
>mm_chr9_31297032_31298058
Length = 1027
Score = 1054 bits (545), Expect = 0.0
Identities = 608/635 (95%), Gaps = 15/635 (2%)
Strand = Plus / Minus
Query: 1 aatctgtagaccaagctggcctcaaactcacaagagatctttctgcctttgcctcctgac 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 738 aatctgtagaccaagctggcctcaaactcac-agagatctttctgcctttgcttcctgac 680
Query: 61 tgctgggatcaaaagtctgtgccatcactgcctggttttgttttgatatttttgtcttat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgctgggatcaaaagtctgtgccatcactgcctggttttgttttgatatttttgtcttac 620
Query: 121 tgattttcttttctttttgtttgtctgttttaattttcaatttttgttgtttttgtta-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgattttcttttctttttgtttgtctgttttaattttcaatttttgttgtttttgttatt 560
Query: 179 -ttgttgttttagagagaaaagaaagtaatatgaagttgggtaggtaggtagaaagtggg 237
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 gttgttgttttagagagaaaagaaagtaatatgaagttaggtaggtaggtagaaagtggg 500
Query: 238 gagggactgagagcagttgggagaggagaaagaatataatcaaaatacattgaatgaaaa 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaggggctgagagcagttgggagaggagaaagaatataatcaaaatacattgaatgaaaa 440
Query: 298 aattaagtaggttaaggttctaaagagaggatttttttcaccttttaattggtttttatt 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 aattaagtaggttaaggttctaaagagaggattttttt-accttttaattggtttttatt 381
Query: 358 attttgagattctaattataccatttaccccttccctttcttccctccagaccctctcat 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attttgagattataattataccatttaccccttccctttcttccctccagaccctctcat 321
Query: 418 atacccctctttgctctctttcaaatttatgacatctttttattaacatatattatattg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atacccctctttgctctctttcaaatttatgacatctttttattaacatatattatattg 261
Query: 478 tatgtatacatacatattatatgtacatctatacatatacattaatatattaatatgtat 537
||||||||||||||||||||| || | | |||||||||||||||||||||||||||
Sbjct: 260 tatgtatacatacatattata--ta----tgtgcatatacattaatatattaatatgtat 207
Query: 538 atatacatataagtgtgtgtgcacgcgagtgtgtgcgcctgctgtc----tgtgtgtgtg 593
|||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||
Sbjct: 206 atatacatataagtgtgtgtgcttgcgagtgtgtgtgtctgctgtctgtgtgtgtgtgtg 147
Query: 594 tgagcgcacatgtggcaactcactatacataatga 628
||||| |||||||||||||||||||||||||||||
Sbjct: 146 tgagcacacatgtggcaactcactatacataatga 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
