Query= MSMg01no513_k16.b1 MSMg01no513_k16.b1 CHROMAT_FILE:
MSMg01no513_k16.b1 PHD_FILE: MSMg01no513_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:14 2005
(643 letters)
>mm_chr9_34001364_34002408
Length = 1045
Score = 1181 bits (611), Expect = 0.0
Identities = 633/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccctttgtcaacttctccaccataaaattttatgttattattactgcctttta 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 845 gaattcaccctttgtcaacttccccaccataaaattttatgttattattactgcctttta 786
Query: 65 attttttatcttatagggaaacacacaatggcaaatagctattataaatccagtaatgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 attttttatcttatagggaaacacacaatggcaaatagctattataaatccagtaatgat 726
Query: 125 ttttgtagataatatattttgtttatatataaagcacttgaaaataaactaagtgtggct 184
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttttgtagataatacattttgtttatatataaagcacttgaaaataaactaagtgtggct 666
Query: 185 gtttactgaaaccactttgtgtctcccgccctgccccccccaccccccccccgggaagag 244
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 gtttactgaaaccactgtgtgtctcccgccctgcccccccccccccccccccgggaagag 606
Query: 245 atgatactaaaatctgaaatctttagctatagcttcatagtgttcaagggctcttggctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgatactaaaatctgaaatctttagctatagcttcatagtgttcaagggctcttggctc 546
Query: 305 ataacttgaaaacttttggtttacaatatcaaacctgtaaaagttgattaaacctgggaa 364
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 545 ataatttgaaaacttttggtttacaacatcaaacctgtaaaagttgattaaacctgggaa 486
Query: 365 ggtttacctgaaatagacttaagccattcctggatattcagttcacttggctgataaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtttacctgaaatagacttaagccattcctggatattcagttcacttggctgataaatg 426
Query: 425 ctaggtgctcattcctgtggagaagtgtaaacagagagtgtctacacagtccatttgggg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctaggtgctcattcctgtggagaagtgtaaacagagagtgtctacacagtccatttgggg 366
Query: 485 aaatgctgagaatccagagggacatgcttcacagatttccttctagctgctgttattcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaatgctgagaatccagagggacatgcttcacagatttccttctagctgctgttattcct 306
Query: 545 ggatttctt--tgtgtgtgtgtgtgtttaactaagagtatcaaaatatcagctctatggc 602
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggatttctttgtgtgtgtgtgtgtgtttaactaagagtatcaaaatatcagctctatggc 246
Query: 603 catgatatggattataaaaatcatgtaaaacaaggcaaggt 643
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 catgatatggattataaaaatcatgtaaaacaaggcaaggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space: 655155
Effective search space used: 655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_k16.g1 MSMg01no513_k16.g1 CHROMAT_FILE:
MSMg01no513_k16.g1 PHD_FILE: MSMg01no513_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:14 2005
(659 letters)
>mm_chr9_33885618_33886673
Length = 1056
Score = 1224 bits (633), Expect = 0.0
Identities = 652/659 (98%), Gaps = 3/659 (0%)
Strand = Plus / Plus
Query: 1 ctgtcttctacaaaagctggaagcattcttaactgctgggaatcctctttagctcctttt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcttctacaaaagctggaagtattcttaactgctgggaatcctctttagctcctttt 260
Query: 61 gttttatatcttttttttatactcatttacaatggtcgaataatttgtacattgtgcaag 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttatatcttttttt-atactcatttacaatggtcgaataatttgtacattgtgcaag 319
Query: 121 catggttttaaaagtgcagctaactggaaaatttcattttaaatgctgatattagatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catggttttaaaagtgcagctaactggaaaatttcattttaaatgctgatattagatgaa 379
Query: 181 agtaaagaagaaataaaaatagaagtgaattttgaaaaagttagttggatacttgaggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtaaagaagaaataaaaatagaagtgaattttgaaaaagttagttggatacttgaggta 439
Query: 241 tttatgtattattccagctgaaacagaaggaaaagaactaaatggtgccaactattttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttatgtattattccagctgaaacagaaggaaaagaactaaatggtgccaactattttat 499
Query: 301 taacattggctaatgtaaaggaaaaaatagaaagtactatatagttagtgaaaataattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taacattggctaatgtaaaggaaaaaatagaaagtactatatagttagtgaaaataattt 559
Query: 361 gacaccacagtatgaaaattatggagcagaaaatctctgcctaaagatttttctcatctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacaccacagtatgaaaattatggagcagaaaatctctgcctaaagatttttctcatctt 619
Query: 421 agttatggtcactaaggtcttattaaattttaattacaaatacaggatgcatattattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agttatggtcactaaggtcttattaaattttaattacaaatacaggatgcatattattgc 679
Query: 481 cttgcttttatatttaacaataacaaagcaaacaaaaatatagtgtatattattaaatat 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttgcttttatatttaacgataacaaagcaaacaaaaatatagtgtatattattaaatat 739
Query: 541 ccagctttaattttataattatttccttctgtgaacccagagaacctacaaacattcaga 600
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 740 ccagctttaatc--ataattatttccttctgtgaacccagaaaacctacaaacattcaga 797
Query: 601 agttatcaagatcatccttctgtgtctatgtgtttgtgtatgtgcatgcatgtgcatgt 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agttatcaagatcatccttctgtgtctatgtgtttgtgtatgtgcatgcatgtgcatgt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space: 678854
Effective search space used: 678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
