Query= MSMg01no513_n10.b1 MSMg01no513_n10.b1 CHROMAT_FILE:
MSMg01no513_n10.b1 PHD_FILE: MSMg01no513_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:29 2005
(649 letters)
>mm_chr9_86733307_86734359
Length = 1053
Score = 1164 bits (602), Expect = 0.0
Identities = 637/652 (97%), Gaps = 7/652 (1%)
Strand = Plus / Minus
Query: 5 gaattcctagttcagcctattgaattttgagtgtttctagcatatgcagaagtaaaagtt 64
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 673 gaattcctagtgaagcctattgaattttgagtgtttctagcctatgcagaagtaaaagtt 614
Query: 65 cacaaaatttaattgtgattcaatgaatgtttctctggagttttaaaaacaatttctctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cacaaaatttaattgtgattcaatgaatgtttctctggagttttaaaaacaatttctctc 554
Query: 125 ttagagaa----agtagtgtaggatgcttcataactaagtgagcagacacaatagaaatt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttagagaaagttagtagtgtaggatgcttcataactaagtgagcagacacaatagaaatg 494
Query: 181 gtaaaaataaatgaatagaatgctgctttaatatcataaattgtttaaaggtgtgatgca 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 493 gtaaaaataaatgaatagaatgctgctttaatatcgtaaattgtttaaaggtgtgatgca 434
Query: 241 cagatatgggtgtttaactctaatttttgtttttcagagatttattcagtatttggcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cagatatgggtgtttaactctaatttttgtttttcagagatttattcagtatttggcctc 374
Query: 301 taggaatacgctattcaatctcagcaactttctagataaaagtggatcccacggtgagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taggaatacgctattcaatctcagcaactttctagataaaagtggatcccacggtgagaa 314
Query: 361 taagcaaatctgggggtggacaaagtcactgttactgagtatttcatcggttatttgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taagcaaatctgggggtggacaaagtcactgttactgagtatttcatcggttatttgagg 254
Query: 421 gagtaatatgaaagtaactattaaattaactatttaactatacacaatcatataaaa--- 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagtaatatgaaagtaactattaaattaactatttaactatacacaatcatataaaatat 194
Query: 478 tattaattttattttgtcacgtggagtgttcactttgacttactctgtcccacagttcat 537
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 193 tattaattttatttggtcacgtggagtgttcactttgacttactctgtctcacagttcat 134
Query: 538 ttataatgactcaggaaatgaagaagaaaaagccaatcaaattaaaaagaaaaagattct 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 133 ttataatgactcaggaaatgaagaagtaaaagccaatcaaattaaaaagaaaaagattct 74
Query: 598 cctctttaaagaaatgtttttgtgggttaatgcagcttgagccatctggctc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cctctttaaagaaatgtttttgtgggttaatgcagcttgagccatctggctc 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1053
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1043
Effective search space: 666477
Effective search space used: 666477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_n10.g1 MSMg01no513_n10.g1 CHROMAT_FILE:
MSMg01no513_n10.g1 PHD_FILE: MSMg01no513_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:29 2005
(585 letters)
>mm_chr9_86579205_86580189
Length = 985
Score = 1071 bits (554), Expect = 0.0
Identities = 570/580 (98%), Gaps = 10/580 (1%)
Strand = Plus / Plus
Query: 1 aaggacagactaagttgtagtgttacgtgactttctaggcagaggaagggggatctcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaggacagactaagttgtagtgttacgtgactttctaggcagaggaagggggatctcgtg 258
Query: 61 acttcaaggtcagcctgatctacagatagttccatctagtccagatagggagacacagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acttcaaggtcagcctgatctacagatagttccatctagtccagatagggagacacagtg 318
Query: 121 atatcctatcttaataaataaataaataaataaataaatatgaaaagtattcaaagccag 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 319 atatcctatcttaataaataaataaataaataaata----tgaaaagtattcaaagccag 374
Query: 181 tctgagctacacagactcagtctcaaaaaaaaagaaaaactttctcccagattgcaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctgagctacacagactcagtctcaaaaaaaaagaaaaactttctcccagattgcaaaaa 434
Query: 241 atttgttagggtaacatctagcctaaccagcaagccgcagatcagtacgaggctctgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atttgttagggtaacatctagcctaaccagcaagccgcagatcagtacgaggctctgtct 494
Query: 301 caaaaagcggtggataactcctgagattgggactgtcctctgacctccacatccatgtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caaaaagcggtggataactcctgagattgggactgtcctctgacctccacatccatgtac 554
Query: 361 aaacacatgcgc--tctctctctctctctcaacctctctctctctctctctctctc---- 414
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaacacatgcgcgctctctctctctctctcaacctctctctctctctctctctctctctc 614
Query: 415 acacacacacacacaaattcttgagccaggcctagtcatacatgtttacacttcagctac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acacacacacacacaaattcttgagccaggcctagtcatacatgtttacacttcagctac 674
Query: 475 taggcctgaaagaacaaaatagtaagatatctaaaaagaagcaaataatagacttatttt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 taggcctgaaagaacaaaatagtaagatatctaaaaagaagcaaataatagacttatttt 734
Query: 535 aaactgcatacatctgtcaatacataaagtatattttctt 574
||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaactgcatacatctgtcaatacataaagtatattttctt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
