BAC Information

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BAC

Clone NameMSMg01-514A17
Chromosome9 (Build37)
Map Location 65,672,453 - 65,673,019
singlet/doubletsinglet
Overlap genenone
Upstream geneAI115600, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180
Downstream geneTrip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514A17.T7 (MSMg01no514_a17.b1)MSMg01-514A17.TJ (MSMg01no514_a17.g1)
ACCAG586622AG586623
length714733
length of high quality
(start - end)		670 (45 - 714)568 (76 - 643)
definitionCHROMAT_FILE: MSMg01no514_a17.b1 PHD_FILE: MSMg01no514_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:46 2005CHROMAT_FILE: MSMg01no514_a17.g1 PHD_FILE: MSMg01no514_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAGTTTTACAATGATCTTTTTGCTATTCACATATGACTGGCAGTT
TGGCTAAGTAAAGAATTCTAGGTTAGAAGTAATTGCTCAGATTTTTGGAG
ATATTTTTCACCGATTTCTGGCTTCTAGTCTTATTCAGAAATCTGAACCT
ACAACATTAATTCCTGATTCTTTCTTTGTGACTTTCTGGAAGCTTGAAGT
CAACTTTATTTTGTTGTTAGTGTTCTAGTCTCATGAGAGTGAGCCCTGGT
GTGGTTCTATCATCCATTACTCTGGTACTCTGTGGCCTCTATGATCTGTA
AACAGATCTTTGAGTCTGGGAAATACTTTTGCAAATCATTCCCTTTCTTT
GCGCTCTCTGGAACTAATATACTTAGACATGATCTTAAATGTTTCTTAAC
TTTTCTTCAATTATTTCTTATATTTCTTTTTGCTCTACTTTCTTAATTTT
ATATCCAATCTGACTGGGTTTTAAATTGTGTGTTTTAATCAATCCCTCCT
CCTCCTCCCTTCCCTGTCTCTCAGTCTCCCTGGTTTTTTAAGACATGGTT
TCTCTGTGTACCCGTAGCTGTTCTGGATCTTGCTCTATAAACCAGGCTGG
GCTTGAATTCACAGAGATCCAACTGGCTGCTGTCTCCTAAGTGCTGGGAT
TAAAGGTGTAAGCT

NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGACTTCAGAATCACATTTACTC
AAAATGCATCTAAGGGACGCTCACACTCAAAAGTCCAACTCTGAAACTAC
TAAAGCTAATCGCGGTAAACTTAATGTGAGGGTCTGCTTTCACTGACAAC
ACTCAAGAAAAAAACACCAACAGCCCAAGAAGAAAAAGGCCTTAACTTCA
GTTTAACTGGGGCATGCTAAGAAGCCTGGGACACACAGTTAGAAACAGTC
TGGGGCACATAATGCTTTTGGTAAGGCTTAAAAACAGTTCTACTATAAAA
AAAAATTAAGTGTCAAAATAACCTGTTCTCTCCTATTAAAGTCCCACCAT
CTAAATGCCAGGCCATCATGTAAAGAAACTCAACGATATAAAGGATAATG
GAGGGAGAGACCACAGTTAGCATTTCTTGTCTTGTCTTGAAAGACCTTTA
ACAAAAACCAAAGGGCCCCGTTCGATGATAAACTATAGAAAATGGTTAGA
TAGCTATTTTATACACTGCATACTGAATACAATCCCCTTTACAGTGAATC
TTTTAAAAGATGTCCTTAGGGGGCTGGAGAGATGACTCATTGGTTAAGAG
CACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATG
GCGGCTCACAACCATCTGTAATGGCTATACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_a17.g1 MSMg01no514_a17.g1 CHROMAT_FILE:
MSMg01no514_a17.g1 PHD_FILE: MSMg01no514_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:47 2005
         (568 letters)



>mm_chr9_65672253_65673219
          Length = 967

 Score = 1052 bits (544), Expect = 0.0
 Identities = 562/568 (98%), Gaps = 1/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgacttcagaatcacatttactcaaaatgcatctaagggacgctcacactcaaaagtc 60
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agtggcttcagaatcacatttactcaaaatgcatctaagggatgctcacactcaaaagtc 260

                                                                       
Query: 61  caactctgaaactactaaagctaatcgcggtaaacttaatgtgagggtctgctttcactg 120
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 261 caactctgaaactactaaagctaaccgaggtaaacttaatgtgagggtctgctttcactg 320

                                                                       
Query: 121 acaacactcaagaaaaaaacaccaacagcccaagaagaaaaaggccttaacttcagttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacactcaagaaaaaaacaccaacagcccaagaagaaaaaggccttaacttcagttta 380

                                                                       
Query: 181 actggggcatgctaagaagcctgggacacacagttagaaacagtctggggcacataatgc 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 actggggcatgctaagaagcctgggacacacagttagaaacagcctggggcacataatgc 440

                                                                       
Query: 241 ttttggtaaggcttaaaaacagttctactataaaaaaaaattaagtgtcaaaataacctg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttttggtaaggcttaaaaacagttctactataaaaaaaa-ttaagtgtcaaaataacctg 499

                                                                       
Query: 301 ttctctcctattaaagtcccaccatctaaatgccaggccatcatgtaaagaaactcaacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctctcctattaaagtcccaccatctaaatgccaggccatcatgtaaagaaactcaacg 559

                                                                       
Query: 361 atataaaggataatggagggagagaccacagttagcatttcttgtcttgtcttgaaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atataaaggataatggagggagagaccacagttagcatttcttgtcttgtcttgaaagac 619

                                                                       
Query: 421 ctttaacaaaaaccaaagggccccgttcgatgataaactatagaaaatggttagatagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctttaacaaaaaccaaagggccccgttcgatgataaactatagaaaatggttagatagct 679

                                                                       
Query: 481 attttatacactgcatactgaatacaatcccctttacagtgaatcttttaaaagatgtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attttatacactgcatactgaatacaatcccctttacagtgaatcttttaaaagatgtcc 739

                                       
Query: 541 ttagggggctggagagatgactcattgg 568
           ||||||||||||||||||||||||||||
Sbjct: 740 ttagggggctggagagatgactcattgg 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space:   534006
Effective search space used:   534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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