BAC Information

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BAC

Clone NameMSMg01-514D05
Chromosome9 (Build37)
Map Location 109,564,592 - 109,565,043
singlet/doubletsinglet
Overlap geneE330001B16Rik
Upstream geneSlc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106
Downstream geneC85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514D05.T7 (MSMg01no514_d05.b1)MSMg01-514D05.TJ (MSMg01no514_d05.g1)
ACCAG586742AG586743
length747625
length of high quality
(start - end)
---449 (77 - 525)
definitionCHROMAT_FILE: MSMg01no514_d05.b1 PHD_FILE: MSMg01no514_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:00 2005CHROMAT_FILE: MSMg01no514_d05.g1 PHD_FILE: MSMg01no514_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTACCCCCCTCCACTCCCCTACTTCTCATTATATTCTCTTTCTTTTCTTT
TTTTTCNTTCCTTAATATTTGCGGGTCGCTAATACGAACTCACTATTAGT
TCCTAAGAATCCGCCGGGAATTTCCCAGGTTTTTTGTTCTGAATGCCCAA
CTTTCCTTTAACAAAAAATGGAAAGTAAAAAATTTCCTTTGGCTTAAAAA
AAAAAAGGGTGGGCTTCCCGCGTTATAACCCGGGCCCTTATAAAAAAAAA
GTTTTAAAGGGGCAAACCCCCCTCCATTGGGGGAAAATTTTAAAAAAGGG
CGCTTTTGTGTTAGAGTCCCCAAATAATAGATATACCCACTTTTACACCA
TCTTTTTTTTTTTAAAAAAAAAGGGCCCCCCCCCCCCCCCCCTCGTGGGT
GTTTGTCCCCACTAAAAAAAAACTTTTTCCCCCCACAAGGGTGGGGGGAA
AAATTTTCCTTCCGCCAGAAAAAAAAAAAAAATGGTGGTGTGTGCCTTTC
TCTCACAATCAAATAAAAACAACAAGGGGGGGGGGGTTGTTAAAATAATA
TTTTTTTTTTATTCAAAATAAAAAAATTTTTTTTCCTCCCTCAAAATAAT
ATAAATCCCCCCCTCTCTCTATCCAATATTAAAGAAGTGGTGTGTAGATT
ATGTTACCTCCTTTCAATCCCCCCTTCTCATTTATGTGTAGTTTCTCCCG
CTCGCCACCCATATTCTTTGATATATTTTTATTCTCTATCTCCCCGG
TCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCATACAGACAACAGACTTGTCT
TGTCCCTTTCTTGTTAAGCCACACCCTGAGATATAACATGCATATCCAAA
AAGTCCTGCAAGGAAACCCCAACAGTATGTGGGCAGCAGACAGTTGAGGG
ACAACTCAACCTGAAGGACATATGGTTCATTTCCCTCTGCCTTGTAGAAG
GCTTGGATAAAAGCTGTGGAAAAGATGAAGGGAGGCCACCAAGCACACTG
TAGGCTGGTGGTTCAGACACATTTACCCTTTAATCTGTTTCTATAGATAC
AAAATGGGTCTGGGGCCTGGGGCTTTGACTCCCTGGCCAGAGTTCTCCGT
TCTGTTCTGAAAGGCCAATAAACAGTACTCCATTAATCATTTGGAGGCAG
AAAGTTCCAAAGTTCAAGATCATTGGTGTGCATTACATAAAGGATTTGAG
GTCTGCCTGTGATGCATGACATCCTGTCTGAAGGANGAGAGAAAGAGAGA
AAGATAGGAAGGGAGAAAGAGAGAAAGAGAAGAAGGGAAGGGAGAAAGAG
AGAAAGAGAAAGAAGAGAAGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_d05.g1 MSMg01no514_d05.g1 CHROMAT_FILE:
MSMg01no514_d05.g1 PHD_FILE: MSMg01no514_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:00 2005
         (449 letters)



>mm_chr9_109564392_109565244
          Length = 853

 Score =  491 bits (254), Expect = e-143
 Identities = 404/456 (88%), Gaps = 11/456 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatacagacaacagacttgtcttgtccctttcttgttaagccacaccctgagatataa 60
           ||||||||||  || |||||| ||||||| ||||||||||| |||  |||||||||||||
Sbjct: 201 accatacagatgactgacttgccttgtccgtttcttgttaaaccatgccctgagatataa 260

                                                                       
Query: 61  catgcatatcca-aaaagtcctgcaaggaaaccccaacagtatgtgggcagcagacagtt 119
           ||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 catgcgtatccataaaa-tcctgcaaggaaaccccaacagtatgtggacagcagacagtt 319

                                                                       
Query: 120 gagggacaactcaacctgaaggacatatggttcatttccctctgccttgtagaaggcttg 179
           ||| |||||||||| || |||||  ||||||||  ||||||||||| |||||||||||||
Sbjct: 320 gagagacaactcaaactaaaggaggtatggttcccttccctctgccatgtagaaggcttg 379

                                                                       
Query: 180 gataaaagctgtggaaaagatgaagggaggcca-ccaagcacactgtaggctggt----g 234
           ||||||||||||||||||||||||||||||| | |||||||||||||||||||||    |
Sbjct: 380 gataaaagctgtggaaaagatgaagggaggc-agccaagcacactgtaggctggtcattg 438

                                                                       
Query: 235 gttcagacacatttaccctttaatctgtttctatagatacaaaatgggtctggggcctgg 294
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 439 gttcagacacatttaccctttaatctgtttctatagatacaaaataggtctggggcctgt 498

                                                                       
Query: 295 ggctttgactccctggccagagttctccgttctgttctgaaaggccaataaacagtactc 354
           |||| ||||||||||| |||||| | | |||||||||| |||| ||||||||| |||  |
Sbjct: 499 ggctctgactccctgggcagagtgcactgttctgttctcaaagaccaataaaccgtaaac 558

                                                                       
Query: 355 catta-atcatttggaggcagaaagttccaaagttcaagatcattggtgtgcattacata 413
           ||||| | ||||||||||||||||| ||| ||||||||| || ||||||||  |||||| 
Sbjct: 559 cattaca-catttggaggcagaaagatccgaagttcaagttc-ttggtgtgtgttacatg 616

                                               
Query: 414 aaggatttgaggtctgcctgtgatgcatgacatcct 449
           |||| |||||||||||||| || | ||||| |||||
Sbjct: 617 aagggtttgaggtctgcctatggtacatgagatcct 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 853
Length adjustment: 10
Effective length of query: 439
Effective length of database: 843
Effective search space:   370077
Effective search space used:   370077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)