Query= MSMg01no514_f18.b1 MSMg01no514_f18.b1 CHROMAT_FILE:
MSMg01no514_f18.b1 PHD_FILE: MSMg01no514_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:13 2005
(657 letters)
>mm_chr9_29023340_29024398
Length = 1059
Score = 1228 bits (635), Expect = 0.0
Identities = 650/655 (99%), Gaps = 2/655 (0%)
Strand = Plus / Minus
Query: 5 gaattc-acaacttggagacatattatatagaagtgtatggctaaccttttagcgggaaa 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattcaacaacttggagacatattatatagaagtgtatggctaaccttttagcgggaaa 800
Query: 64 ataaatgacaaaagaatgagaaagacattttctttaagtaaaagaaccatttacttagtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ataaatgacaaaagaatgagaaagacattttctttaagtaaaagaaccatttacttagtt 740
Query: 124 aactttggaatttcttagagtacctta-gcatttctctgaactgatagaaaatgaggctt 182
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 739 aactttggaatttcttagagtaccttatgcatttctctgaactgatagaaaatgaggctt 680
Query: 183 cggtcttgaaatggggcagggctggtagagtgcacagctctccattgagggaacagttga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cggtcttgaaatggggcagggctggtagagtgcacagctctccattgagggaacagttga 620
Query: 243 tgctggagactaacaagcagcaccaagccaaaccgtgattgtgatccacatttccctaag 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 619 tgctggagactaacaagcagcaccaagacaaaccgtgattgtgatccacatttccctaag 560
Query: 303 aatcaatgctttctcatcatatgttcctaggttctcagtggctgagatttggacctgatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aatcaatgctttctcatcatatgttcctaggttctcagtggctgagatttggacctgatc 500
Query: 363 acctgtgctgacatgagaagcaatgtctgaagtctttctttatcatagcacattacatag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acctgtgctgacatgagaagcaatgtctgaagtctttctttatcatagcacattacatag 440
Query: 423 gaaggcactgcatggttcagggaagcagttgcaagtcaccctctagatgaaataacaggc 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 439 gaaggcactgcatggttcagggaagcagttgtaagtcaccctctagatgaaataacaggc 380
Query: 483 accctgctttcttattttcaagatggcagagataatcttccttggtcacagttcgagaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 accctgctttcttattttcaagatggcagagataatcttccttggtcacagttcgagaaa 320
Query: 543 tagctgtggaggggaagcattgcttgttacctttagaaaggacttggaagacacttgatg 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagctgtggaggggaagcattgcttgttacctttagaaaggacttggaagacacttgatt 260
Query: 603 tacctgctgggcccattggaccatctcttatgactttagacacatggaaaggtta 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tacctgctgggcccattggaccatctcttatgactttagacacatggaaaggtta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1059
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1049
Effective search space: 678703
Effective search space used: 678703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_f18.g1 MSMg01no514_f18.g1 CHROMAT_FILE:
MSMg01no514_f18.g1 PHD_FILE: MSMg01no514_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:14 2005
(539 letters)
>mm_chr9_28857168_28858106
Length = 939
Score = 1000 bits (517), Expect = 0.0
Identities = 532/537 (99%)
Strand = Plus / Plus
Query: 3 atacaaaggatagaatgaagtgtagagactggtgtcgcagcattgacaggattcactggt 62
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 atacaaaggatagaatgaagtgtagagactggtgtcgcagcattgacaggaatcactggt 262
Query: 63 catagtcactgagggacgagtagaccctgggttcacactagagctaataaacttgagata 122
||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 263 catagtcactgagggactagtagaccctcagttcacactagaggtaataaacttgagata 322
Query: 123 tcagaatcttctttctgctccccctctcccttcaccatcctctgcctccttctcctttct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcagaatcttctttctgctccccctctcccttcaccatcctctgcctccttctcctttct 382
Query: 183 cttcctgtctgtgaggtttcaattttaactctgggcacatcactcagtttctcaatctgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttcctgtctgtgaggtttcaattttaactctgggcacatcactcagtttctcaatctgt 442
Query: 243 agtcagataagcacagaactgcttggacttcagtggtttgagaagtttctcttactgttg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtcagataagcacagaactgcttggacttcagtggtttgagaagtttctcttactgttg 502
Query: 303 tcccatctgtctactttctgcttcttagctagccacttgggcagtgtgtgtaaagcccct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcccatctgtctactttctgcttcttagctagccacttgggcagtgtgtgtaaagcccct 562
Query: 363 gatagccagcactgtcatctatcctgcaggtgaaacagctcagtaacatgagtatcagga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gatagccagcactgtcatctatcctgcaggtgaaacagctcagtaacatgagtatcagga 622
Query: 423 tgagtgatgccaagcaggacctgggtcaaacatactgaacacaggacagtttgaagacca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgagtgatgccaagcaggacctgggtcaaacatactgaacacaggacagtttgaagacca 682
Query: 483 cacacccaactctgcctcacctgtgatctgatgactaatgggaactttgtacaacag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cacacccaactctgcctcacctgtgatctgatgactaatgggaactttgtacaacag 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
