Query= MSMg01no514_j05.b1 MSMg01no514_j05.b1 CHROMAT_FILE:
MSMg01no514_j05.b1 PHD_FILE: MSMg01no514_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:31 2005
(561 letters)
>mm_chr9_59608520_59609480
Length = 961
Score = 891 bits (461), Expect = 0.0
Identities = 470/473 (99%)
Strand = Plus / Minus
Query: 89 aataggggaacacgtaacatcatgtacctccattccagcttgtccaacctcttaacactg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aataggggaacacgtaacatcatgtacctccattccagcttgtccaacctcttaacactg 902
Query: 149 caatgtcatgctgtcaactacaaagttcatgcttgaaaacatttcagtcgagtcaccaaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 caatgtcatgctgtcaactacaaagttcatgcttgaaaacatttcagtcgagtcaccaaa 842
Query: 209 agaaaaagagtttcaaaatgtattaagtttacaattttcggttggacagaagttattgct 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agaaaaagagtttcaaaatgtattaagtttacaattttcggttggacagaagttattgct 782
Query: 269 atcctcatacatgtggtctacagcctagatgatatatgcatatcatcaatgatatattcc 328
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 781 atcctcatacatgtggtctacagcctagatgatatacacatatcatcaatgatatattcc 722
Query: 329 attacccataaaagactttgctaaaaaaattaacacattaaacaagccttaaaaagatag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attacccataaaagactttgctaaaaaaattaacacattaaacaagccttaaaaagatag 662
Query: 389 ccttaaattcaaaaatagaaaccagaaaagaacaaattatacaaccacaccaagaaacaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccttaaattcaaaaatagaaaccagaaaagaacaaattatacaaccacaccaagaaacaa 602
Query: 449 ttagataactctggaaaacaagccattcttcaaaataatctgttctttcaagcaatttca 508
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttagataactctagaaaacaagccattcttcaaaataatctgttctttcaagcaatttca 542
Query: 509 gtatcttattgaaaaggacatttcagtatcttatgagaaagaactattctcaa 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtatcttattgaaaaggacatttcagtatcttatgagaaagaactattctcaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_j05.g1 MSMg01no514_j05.g1 CHROMAT_FILE:
MSMg01no514_j05.g1 PHD_FILE: MSMg01no514_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:32 2005
(577 letters)
>mm_chr9_59418966_59419942
Length = 977
Score = 1077 bits (557), Expect = 0.0
Identities = 572/577 (99%), Gaps = 1/577 (0%)
Strand = Plus / Plus
Query: 1 caggacagccaggatcacacagggaaacccagtgttgagaaatggaaaaaaaaaaaaaag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 202 caggacagccaggatcacacagggaaacccagtgttgagaaatgg-aaaaaaagaaaaag 260
Query: 61 aaaaagaaagaaatcaatctaggaatcctgtttaacttttttctattccaatctttgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagaaagaaatcaatctaggaatcctgtttaacttttttctattccaatctttgtcc 320
Query: 121 atatgtgctcattctacatcaacagttcttaggtccatttatctctgtttacactgctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtgctcattctacatcaacagttcttaggtccatttatctctgtttacactgctcc 380
Query: 181 atctttgttcaggcttggcacacttagaatcgcatcctagtcgatgcacttgacttgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttgttcaggcttggcacacttagaatcgcatcctagtcgatgcacttgacttgatt 440
Query: 241 cttccagaaaaataatttttaaaaattgtaattatgtatatgtgttgtttatgtatttga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccagaaaaataatttttaaaaattgtaattatgtatatgtgttgtttatgtatttga 500
Query: 301 atataggtgaccatagatgccagaagagagagcattagatgctctaaaaaggagttacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataggtgaccatagatgccagaagagagagcattagatgctctaaaaaggagttacag 560
Query: 361 gaagtcgtgtgcttcctaacgtgaggtaagatctgacgtggatcttctggaactgccctc 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gaagtcgtgtgcttcctaacgtgaggtaagatctgacgcggatcttctggaactgccctc 620
Query: 421 accactgagacatctctccactctgagtttcttttaggtttttaaacgcatttgactgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accactgagacatctctccactctgagtttcttttaggtttttaaacgcatttgactgct 680
Query: 481 agatctctcagcatggaagtccagcttcctgcttctaaaggagccatgtcttgaagtgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agatctctcagcatggaagtccagcttcctgcttctaaaggagccatgtcttgaagtgcc 740
Query: 541 atatcctatcgctctacctgtattatctacaaagaaa 577
|| ||||||||||||||||||||||||||||||||||
Sbjct: 741 atctcctatcgctctacctgtattatctacaaagaaa 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
