AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGAGAGCCATAGCCACATAATCAGACTCTGGCTTAAACATCCCC
TAACACACACACACACACACACACACACACACACACACACTGACTCTGGC
TTAAACATCCCCTAACACACACACACACACACACACACACACACACTGAC
TCTGGCTTAAACATCCCCTAACACACGCACGCACGCACGCGCACACGAAT
TAAGAAAAAGTGTCAACTACTAAAACACTACTCATTAGGCAGGGATGGTT
TGTGTTGGTACGCAGCTAAGCTAAATGCTGAGCAACTCGCAAAAAATCTG
AGAAAATAACCCTTTGAAATGATGGAATGAGATACTCTAGTTAATAACTT
GTACATACTTTTAAAAAAGCCATTCAAAACCTTAATCCATTTAATTTATC
CTTTCTATCTTACCTATTTTTTTTTGAGCAGAGTGAATTTTTTTTTTTTT
TAAGACAGGGTCTCTTCATGCAGCCTGGCCCCAAACTCAGACATCCACCT
GTTTCCCTGTTTCTACTGGGTACGCTACGGTAGCTGGTTCCTAGCTTTTT
TTTCCAAAATTGACCATTACTCTGTATTGGTGAGAGATGAGAGACAGTGA
GAGACACTAAAAATGTGGCCCTGTGGAGATCAGTCAACTCTGGGGAGATG
TTTCTCCTCCTACCTTGGATCTAGAAATTGAAGACAGATCATTATTTTGC
TGAAAATGGATTTTATCCGCCAAACCATC

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTTAGTTCTATACCCCATTTTTTTGA
TTGGGTTGTTTGGTTTTTTGGTGATTAACTTCTTGAGTTCTTTATATATT
TTGGATATTACTCCTCTATTGGATGTGTTGTTAGTGAAGTTTTTTTTTTC
AATCTGTAGGTTGCTGATTTGTCTTACTGTCCTTTGCCTTACAGAAAATT
TCTGGTTTCATGAGGTCCCATTTATCAATTCTTGATCTTAGAGCATGGGC
CGCTGGAGTTGTGCTTAGGAAATTTCCCCCAGTCCCAATAAGTGCAAGGC
TCTTTCCCACTTTCTCTTCTATTAGATTCAGTGTATCTGGCTTTATGTTG
AGGTCCTTGATCCACTTAGACTTGAGCTTTATACAAGGTGACAAATATGG
GTCTATTTTCATTCTTCTACATACAGACAGCCAGTTAGACCAGCACCATT
TATTGAAGATGCTTTCTTTTTTCTATTGTATATTTTTGGCATCTTTCAAA
AATCAAGTGACACTAAGAGTATGGTTTTATTTCTGGGTCTTAAATTCTAT
TCCATTGATCAATATGTCTGTCTCTGTACGAATACCATGCAGTTTTGTTT
TGTTTTTTTAATCACTATTGCTCTGTAGTAAAGCTTGAGGTCAGGGATGG
CGATTTGCCCCAGCTGTTCTTTTATTGTTAAGAAATGTTTTCGCTATTCT
CCGGTTTTTGTCTTTCCAGGGGAAATT

Query= MSMg01no515_d01.b1 MSMg01no515_d01.b1 CHROMAT_FILE:
MSMg01no515_d01.b1 PHD_FILE: MSMg01no515_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:24 2005
         (541 letters)



>mm_chr9_7996277_7997217
          Length = 941

 Score =  899 bits (465), Expect = 0.0
 Identities = 519/557 (93%), Gaps = 33/557 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggagagccatagccacataatcagactctggcttaaacatcccctaacacac 64
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 197 gaattctaggagagccagagccacataattagactctggcttaaacatcccctaacacac 256

                                                                       
Query: 65  acacacacacacacacacacacacacacacactgactctggcttaaacatcccctaacac 124
           |||||||||||||||||||||            |||||||||||||||||||||||||||
Sbjct: 257 acacacacacacacacacaca------------gactctggcttaaacatcccctaacac 304

                                                                       
Query: 125 acacacacacacacacacacacacacactgactctggcttaaacatcccctaacac---- 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 305 acacacacacacacacacacacacacactgactctggcttaaacatcccctaacacacac 364

                                                                       
Query: 181 ----------------acgcacgcacgcacgcgcacacgaattaagaaaaagtgtcaact 224
                           || ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 365 acacacacacacacatacacacgcacgcacgcacgcacgaattaagaaaaagtgtcaact 424

                                                                       
Query: 225 actaaaacactactcattaggcagggatggtttgtgttggtacgcagctaagctaaatgc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actaaaacactactcattaggcagggatggtttgtgttggtacgcagctaagctaaatgc 484

                                                                       
Query: 285 tgagcaactcgcaaaaaatctgagaaaataaccctttgaaatgatggaatgagatactct 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgagcaactcgcaaaaaatctgagaaaataaccctttgaaatgatggaatgagatactct 544

                                                                       
Query: 345 agttaataacttgtacatacttttaaaaaagccattcaaaaccttaatccatttaattta 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agttaataacttgtacatacttttaaaaaagccattcaaaaccttaatccatttaattta 604

                                                                       
Query: 405 tcctttctatcttacctatttttttttgagcagagtgaattttttttttttttaagacag 464
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 605 tcctttctatcttacctatttttttttgagcagagtgaattttttttttttt-aagacag 663

                                                                       
Query: 465 ggtctcttcatgcagcctggccccaaactcagacatccacctgtttccctgtttctactg 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggtctcttcatgcagcctggccccaaactcagacatccacctgtttccctgtttctactg 723

                            
Query: 525 ggtacgctacggtagct 541
           |||||||||||||||||
Sbjct: 724 ggtacgctacggtagct 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)