Query= MSMg01no515_f24.b1 MSMg01no515_f24.b1 CHROMAT_FILE:
MSMg01no515_f24.b1 PHD_FILE: MSMg01no515_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:40 2005
(562 letters)
>mm_chr9_116214181_116215138
Length = 958
Score = 1000 bits (517), Expect = 0.0
Identities = 544/555 (98%), Gaps = 4/555 (0%)
Strand = Plus / Plus
Query: 8 ttccattcagcaaatggaagaaaagaaacacaacctgatttcccaaggaattttgttcag 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 208 ttccattcagcaaatggaagaaaagaaacacaacctgatttcccaaggaattttgtccag 267
Query: 68 aatcttagcctgaaagaaaacttcacagaatcagctcttgtctttgtgtgactagccctg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatcttagcctgaaagaaaacttcacagaatcagctcttgtctttgtgtgactagccctg 327
Query: 128 gtggggccttaaacagaagcctcttgtccctaagagaacacaacatttaattaattaatt 187
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 328 gtggggccttaaacagaagcctcttgtccctaagagaacacaatatttaattaattaatt 387
Query: 188 aataattaaaatagaaacatctttttcaagcactgtttatgtcttcaaaagtgggggttt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aataattaaaatagaaacatctttttcaagcactgtttatgtcttcaaaagtgggggttt 447
Query: 248 ttgatcattgtttcacaagtaacacctgagatagtctgagtgaagattaaaactaaaaag 307
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttggtcattgtttcacaagtaacacctgagatagtctgagtgaagattaaaactaaaaag 507
Query: 308 gccgacgaaaattgtagttgtggctaatcaataggccagacatggcaaattataggtatc 367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gccgatgaaaattgtagttgtggctaatcaataggccagacatggcaaattataggtatc 567
Query: 368 agcaaacttcaaatccttctgattatagccccacttttagaactgcacatagagactcac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agcaaacttcaaatccttctgattatagccccacttttagaactgcacatagagactcac 627
Query: 428 agccaagaggcgcagcattagccatcccacagtaaccaccttctctacgctctttgcttc 487
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 628 agccaagaggcgcagcattagccatcccccagtaactaccttctctacgctctttgcttc 687
Query: 488 ccttctcatttctgtagggtttttttttaacctctctgtgaagtcaggattgggaaatta 547
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 688 ccttctcatttctgtagggtttttt----acctctctgtaaagtcaggattgggaaatta 743
Query: 548 tatggtaaaattcag 562
|||||||||||||||
Sbjct: 744 tatggtaaaattcag 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 958
Length adjustment: 10
Effective length of query: 552
Effective length of database: 948
Effective search space: 523296
Effective search space used: 523296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_f24.g1 MSMg01no515_f24.g1 CHROMAT_FILE:
MSMg01no515_f24.g1 PHD_FILE: MSMg01no515_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:40 2005
(574 letters)
>mm_chr9_116419885_116420856
Length = 972
Score = 1056 bits (546), Expect = 0.0
Identities = 567/574 (98%), Gaps = 2/574 (0%)
Strand = Plus / Minus
Query: 1 ttcagcagttcacaatgaaagtgttggggtttaagtgtggccatgcctggaggccctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttcagcagttcacaatgaaagtgttggggtttaagtgtggccatgcctggaggccctaga 713
Query: 61 gctcactgagggatggtgctaggcaaattatatacttcaaacactcagcttctggcacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gctcactgagggatggtgctaggcaaattatatacttcaaacactcagcttctggcacct 653
Query: 121 tctccccttccaagctccggccttctcacttgcatttcaagcagacaactgccccgcgtt 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 652 tctcctcttccaagctccggccttctcacttgcatttcaagcagacaactgccccgtgtt 593
Query: 181 atttcttccagaagcctgcacttcctaattcctagggacatttgaaagatgaagcctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atttcttccagaagcctgcacttcctaattcctagggacatttgaaagatgaagcctttg 533
Query: 241 atacgttgccttccttaaacctgagaagcaaaagcaaagggaattcattaagatccgctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 532 atacgttgccttccttaaacctgagaagcaaaagcaaagggaattcattaagacccgctt 473
Query: 301 cacacagcggcagagagcacgagctggttaacgtatgtgcagcccccctgtgaactcttt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 472 cacacagcggcagagagcacgagctggttaacgtatgtgcag-ccccctgtgaactcttt 414
Query: 361 agtcctcctcaaataaaaagttcatatctgtggaagtgcctaaatcttaaggaaacttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agtcctcctcaaataaaaagttcatatctgtggaagtgcctaaatcttaaggaaacttgc 354
Query: 421 cttgatagcaaggaaagaggccttggtggcagtggtgtcttgtcacctcacatgccagtg 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 353 cttgatagcaaggaaagaggccttggtggcagtagtgtcttgtcacctcacatgccattg 294
Query: 481 acacataaggcagtgaatgcgctatcctcatgtcacgctttccaaagtttgtgattttaa 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acacat-aggcagtgaatgcgctatcctcatgtcacgctttccaaagtttgtgattttaa 235
Query: 541 aaacatgttactgggctggagagatggctcagtg 574
||||||||||||||||||||||||||||||||||
Sbjct: 234 aaacatgttactgggctggagagatggctcagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 972
Length adjustment: 10
Effective length of query: 564
Effective length of database: 962
Effective search space: 542568
Effective search space used: 542568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
