Query= MSMg01no515_h06.b1 MSMg01no515_h06.b1 CHROMAT_FILE:
MSMg01no515_h06.b1 PHD_FILE: MSMg01no515_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:46 2005
(672 letters)
>mm_chr9_81944592_81945661
Length = 1070
Score = 658 bits (340), Expect = 0.0
Identities = 390/408 (95%), Gaps = 4/408 (0%)
Strand = Plus / Minus
Query: 266 cttgccagttggccgcatcacttgtcagttatgcctcgtggcagaaatggcttactggag 325
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1070 cttgccagttggccgcatcacttgtcagttgtgcctcatggcagaaatggcttactggag 1011
Query: 326 cagagctgcttgcttcatagtggccagtatgcagagagagatagagtctgtacctgtcaa 385
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 cagagctgcttgcttcatagtagccagtatgcagagagagatagagtctgtacctgtcaa 951
Query: 386 tgtacaccctcagcaacatatttccttcagttaggctccacctcctcataggcctttcag 445
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 950 tgtacaccctcagcaacatatttccttcagctaggctccacctcctcatagacctttcag 891
Query: 446 ctatcagttaatccattaacaaagttagtgagtgacttggtataaccccctt-aaatacc 504
||||||||||||||||| ||||||||||| |||||||| ||||||| |||| |||||||
Sbjct: 890 ctatcagttaatccattgacaaagttagtttgtgacttgatataaccacctttaaatacc 831
Query: 505 accaccaactgggaacaaaactgcttacacatgagtctttttgaaagacacttcattcta 564
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 830 accaccaactgggaacaaaactgcttacacatgagtcttcttgaaagacacttcattcta 771
Query: 565 gacctataagcatgtctgttggagatatctataaaatacaatatgtttttttttcctcat 624
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 770 tacctataagcatgtctgttggagatatctataaaatacaatat---tttttttcctcct 714
Query: 625 gggtacttatttctcaacagcaatgacactgaaactatttattattaa 672
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggatacttatttctcaacagcaatgacactgaaactatttattattaa 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_h06.g1 MSMg01no515_h06.g1 CHROMAT_FILE:
MSMg01no515_h06.g1 PHD_FILE: MSMg01no515_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:46 2005
(667 letters)
>mm_chr9_81765142_81766208
Length = 1067
Score = 1259 bits (651), Expect = 0.0
Identities = 663/667 (99%)
Strand = Plus / Plus
Query: 1 attccttatttcatttctgattagattgctttcaccttggcagaactctggacaataaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttatttcatttctgattagattgctttcaccttggcagaactctggacaataaac 260
Query: 61 cctcttatatttaacatatgctttagtttagttgtaatgaatagaataatagaacagctt 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcttatatttaacacatgctttagtttagttgtaatgaatagaataatagaacagctt 320
Query: 121 attagaaactgattttgatggttggtgagagagatgtaacattcttaatctttagtatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 attagaaactgattttgatggttggtgagagagatgtaacattcttaatttttagtatgg 380
Query: 181 tagagcatgtatttaaaaggcctcttcttttcctgtgtcatcctgcttacaggaatacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagagcatgtatttaaaaggcctcttcttttcctgtgtcatcctgcttacaggaatacct 440
Query: 241 gtcattgcaagatgaaaaacccagccaaaccttacttcacaccccacagtggtgactgtt 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcattgcaagatgaaaaacccaaccaaaccttacttcacaccccacagtggtgactgtt 500
Query: 301 taatccttctcagaacaatggcaggataaacgtactgttccttcttcactaatagcatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatccttctcagaacaatggcaggataaacgtactgttccttcttcactaatagcatcc 560
Query: 361 ctgaccagaggcttatcgtccattttctgtttgtaatttgtttattttcttattctacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaccagaggcttatcgtccattttctgtttgtaatttgtttattttcttattctacta 620
Query: 421 attctattgtctcctcttcacattaaaagcccagagggaaggaacgtctgtgtctctata 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctattgtctcctcttcagattaaaagcccagagggaaggaacgtctgtgtctctata 680
Query: 481 gtgtctggtacaaccaattactgattctgaatgcttactgacaatataagactgtttaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtctggtacaaccaattactgattctgaatgcttactgacaatataagactgtttaat 740
Query: 541 attctgcttttctataacagtgcatagaatatttaacatagttatggaaacattactgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attctgcttttctataacagtgcatagaatatttaacatagttatggaaacattactgct 800
Query: 601 tcccagaactgtatttgtctgatagctatatcctaaataatccattattatgcaagtttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcccagaactgtatttgtctgatagctatatcctaaataatccattattatgcaagtttt 860
Query: 661 atctttt 667
|||||||
Sbjct: 861 atctttt 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
