Query= MSMg01no516_b18.b1 MSMg01no516_b18.b1 CHROMAT_FILE:
MSMg01no516_b18.b1 PHD_FILE: MSMg01no516_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:42 2005
(674 letters)
>mm_chr9_61268088_61269154
Length = 1067
Score = 1195 bits (618), Expect = 0.0
Identities = 655/670 (97%), Gaps = 7/670 (1%)
Strand = Plus / Minus
Query: 5 gaattcatgagggttaagttaaaggaagcagaggaatgggaaatgtgaatacagtggcta 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaattcatgagggttaagttaaaggaagcagaggaatgggaaatgtgaatacagtggct- 785
Query: 65 gctcagaataggtaggtatgttacttaaacaagggcctggcaatggtcggcttaaggtct 124
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 784 --t-agaataggtaggtatgttacttaaacaagggcctggcaatggttggcttaaggtct 728
Query: 125 tttaatggcaatcacactgggaacccagaggtctagagtccagcatgggcattgaccctt 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 727 tttaatggcaatcacactgggaacccagaggtctagagttcagcatgggcattgaccctt 668
Query: 185 ctgctcctgagctgtacccttggtctatcttttccctagtcccctgcatcttctttgccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctgctcctgagctgtacccttggtctatcttttccctagtcccctgcatcttctttgccc 608
Query: 245 aggactctgcatcactctgctcatcctggggaacaacaagagggaagaggcaccaagaac 304
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 607 aggactctccatcactctgctcatcctggggaacaac---agggaagaggcaccaagaac 551
Query: 305 tgaaacttgacaagctgggctggggcaggaagaaagatggggtcagaactagattgggtt 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgaagcttgacaagctgggctggggcaggaagaaagatggggtcagaactagattgggtt 491
Query: 365 gggtaccctagaacatgctgttccttctctctgcagcattcctccccacctccctttggc 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 490 gggtaccttagaacatgctgttccttctctctgcagcattcctccccacctccttttggc 431
Query: 425 atgtcacctatatccttcaggtatgctcagctcttcctcctgggcgcccttttgctctga 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgtcatctatatccttcaggtatgctcagctcttcctcctgggcgcccttttgctctga 371
Query: 485 gtctcttgcccaggttaaagcctcttgccatgacatttcacagcatagtagctggtttct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtctcttgcccaggttaaagcctcttgccatgacatttcacagcatagtagctggtttct 311
Query: 545 gtcattgtctctcaatgactgagagctctgtgaaaggattgtcatattgatccttacatc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtcattgtctctcaatgactgagagctctgtgaaaggattgtcatattgatccttacatc 251
Query: 605 ttagccactagaaccaggcctgagaatttatgagagtctatcacattggatggatggatg 664
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250 ttagccactagaaccaggcctgagaacttatgagagtctatcacattggatggatggatg 191
Query: 665 gatggatgga 674
||||||||||
Sbjct: 190 gatggatgga 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1067
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1057
Effective search space: 701848
Effective search space used: 701848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_b18.g1 MSMg01no516_b18.g1 CHROMAT_FILE:
MSMg01no516_b18.g1 PHD_FILE: MSMg01no516_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:42 2005
(606 letters)
>mm_chr9_61102732_61103739
Length = 1008
Score = 1110 bits (574), Expect = 0.0
Identities = 599/608 (98%), Gaps = 2/608 (0%)
Strand = Plus / Plus
Query: 1 cacttctttcatcctccaacattgtgaaagacacgaggaccttctgtgtagagtctgtcg 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 201 cacttctttcatcctccaacagtgtgaaagacacgaggaccttctgtgtagagtctgttg 260
Query: 61 gggg--tataatagaagaaacctagcccttccttcaggaacttaatccctagggcaggag 118
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggggtataatagaagaaacctagcccttccttcaggaacttaatccctagggcaggag 320
Query: 119 acaattcactaaacaagcagaacagaagatgaactataaacacctcaaccgacactaaaa 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaattcagtaaacaagcagaacagaagatgaactataaacacctcaaccgacactaaaa 380
Query: 179 taacacactatagaaagcaggagcaaagagagctgacgccactgggattatgtaatctga 238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 taacacactatagaaagcaggagcaaagagagctgaagccactgggattatgtaatctga 440
Query: 239 ctgtgagggactgatggtcaagaagatatttagcagacccaaagttctgagacaggaact 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgagggactgatggtcaagaagatatttagcagacccaaagttctgagacaggaact 500
Query: 299 catctgattctggagatggagaaattgcaggttcccagggaccctggaaatatatgaatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catctgattctggagatggagaaattgcaggttcccagggaccctggaaatatatgaatg 560
Query: 359 ggacatgtatccacgaatcaaatgcatatgtgcccccatccctcagtatacctgaattgt 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacaagtatccacgaatcaaatgcatatgtgcccccatccctcagtatacctgaattgt 620
Query: 419 accaaggaaaagacacccagcacagtctccaagaaagaactcagcagagtactttcctag 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 accaaggaaaagacacccagcacagtctccaagaaagaactcagcagagtacgttcctag 680
Query: 479 cattcacaaagggttgatttctatgatgctcacttacccaaagacgtgtattcagctttc 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 cattcacaaagggttgatttctatgatgctcacttacccaaagacgtggattcagctttc 740
Query: 539 agttgtgttggtgagcatctgtgatgggaaacttatgctaaggaggtatgaccctcctgt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttgtgttggtgagcatctgtgatgggaaacttatgctaaggaggtatgaccctcctgt 800
Query: 599 caatgctg 606
||||||||
Sbjct: 801 caatgctg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1008
Length adjustment: 10
Effective length of query: 596
Effective length of database: 998
Effective search space: 594808
Effective search space used: 594808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
