BAC Information

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BAC

Clone NameMSMg01-516C13
Chromosome9 (Build37)
Map Location 61,896,780 - 61,897,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
Downstream geneGlce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516C13.T7 (MSMg01no516_c13.b1)MSMg01-516C13.TJ (MSMg01no516_c13.g1)
ACCAG588223AG588224
length683745
length of high quality
(start - end)		77 (89 - 165)662 (84 - 745)
definitionCHROMAT_FILE: MSMg01no516_c13.b1 PHD_FILE: MSMg01no516_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:46 2005CHROMAT_FILE: MSMg01no516_c13.g1 PHD_FILE: MSMg01no516_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGGCGTNNNNTTTNNNNNNCCCTTATAAXXXXXXXXXXXXXXXXXXXX
XCTATTTCCAGAGGATCCGCGGAATCCATCTCATTTCGGTCTCACTTGGC
TTTGAAGAAATTTTCTTTCACAGCAGTCCTGGGGCTGAGGAAAGAAGCTG
GCTGGTCTACAGAGGCTAGGAGAACATGAAATCCAAGATCCCTCCATTTC
TCCAGCATCTCCATTCCAACATTCAAATTCTCAGCATCCCCCAAGGTTCT
TCCCGGAGCCCCCATTTCCTAGCCCGGGGAAAGCTCTTGGTTTTCCAAGA
AAAAGCCCCCCCCCCAAAAAACAAATTAAACCCCCCGGGGCGGGGGGCCC
TTCCGGGGGGGGGAAAAAAAAATATGTTTGTTTGGNNTNCTTTTGGGTGG
GTTCCCCCCCCCTCCGGGGGTGTTTTTTTGTCCCCCTTTTTTCCCCCGGG
GGGGGGGGAAAAAAAAACCCCCCCCCCCCGGGGGTTGTGTTTTTTGGGGA
GAGAAAAACCCTCTTCCCCTCCCAAAAAAATTATTATTTTTTTCTCCTTC
TTTTTAAAAAAAAAAAAAAAGGGGGGGCGGGGGGGGGGTTTGTTGTAACA
ACCACACTCCTGTCTTTTTTTCTTGTCNGGNTTATTAGTTTTACGTCGAT
ACGAAAAGTTAATTTTCCGGGGGGTGGGGGGGT

NNTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGGACTTCCTGTCC
CTGCCCCGAGTGGTTAGGGCTTTCAATGCTTTCAGCCAGATGTCTAGAAA
GGTTCACAAATGCAGGTAAAAGGCCGTTATATTCAGGGTTGGAAGGGTTC
AGCCATTAAGGGGACTAAGGCTCTTACATGTGGCTCACAACCATTTGTAA
CTCCAGCCCCAGAGGATCCAATGTTCTGGCCTCCACAGACATCATACATT
TACATATATGCAAATAAACCACCCATGCACATAAAATTAAATAAATATAA
AAGAAAAAACACTCTACTCTTCATATTTAAAACACAAACTTGGGGCCTAG
GAATAGCTCAGCTGGTATAGTTCTTGCCTTGCACAGATGAGGTTCTGAGT
TCTGTTGCCGTGTAACATCAGAGGAGGGTGGCCAAGACAGGAGCGTCCAT
GGGGCTCACCAGCCAGACAACCTGAACTACTTGGTGAACCCCCAAATTCC
ATCTCAAAAAACAAGGTGGACAGTGTCCTGAGGAATAATACCAGAAGTTA
ACCCTTTGGTCCCTGAAAGCATGAGCCTACAGGGAACACACATATACACA
TACATACATACATACACACATACATACACACATATATACCCAACACACAC
ATACACACATATATACACACATCCACACATACATACATGAACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_c13.g1 MSMg01no516_c13.g1 CHROMAT_FILE:
MSMg01no516_c13.g1 PHD_FILE: MSMg01no516_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:46 2005
         (662 letters)



>mm_chr9_61896778_61897839
          Length = 1062

 Score =  600 bits (310), Expect = e-175
 Identities = 328/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagggacttcctgtccctgccccgagtggttagggctttcaatgctttcagccagatgt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 336 tcagggacttcctgtccctgccccgagtggttagggctttcagtgctttcagccagatgt 277

                                                                       
Query: 61  ctagaaaggttcacaaatgcaggtaaaaggccgttatattcagggttggaagggttcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctagaaaggttcacaaatgcaggtaaaaggccgttatattcagggttggaagggttcagc 217

                                                                       
Query: 121 cattaaggggactaaggctcttacatgtggctcacaaccatttgtaactccagccccaga 180
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 216 cattaaggggactaaggttcttatatgtggctcacaaccatttgtaactccagccccaga 157

                                                                       
Query: 181 ggatccaatgttctggcctccacagacatcatacatttacatatatgcaaataaaccacc 240
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 156 ggatccaatgttctggcctccacagacatcgtacatttatatatatgcaaataaaccacc 97

                                                                       
Query: 241 catgcacataaaattaaataaatataaaagaaaaaacactctactcttcatatttaaaac 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  cattcacataaaattaaataaatataaaagaaaaaacactctactcttcatatttaaaac 37

                                             
Query: 301 acaaacttggggcctaggaatagctcagctggta 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 36  acaaacttggggcctaggaatagctcagctggta 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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