NNNNNAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTATGCTCATCTAGTTCCTTCCAGTCCTGCTAGAGACC
TGAGTTTCTTTATGAGTGTTCACATGACATTACACTCATCTCCACCTCAG
TGCTACCACCAATACAGCTACAGGGATCAGAGCAACTTCATTTGCTCCTT
CAGGTCAGAGGGAACAGTCCTCAAATATCTGACCCTTTAAATATATCTAA
AAAATCACTTTGTTTACATTTACTGCTCTTTCTAAAGACAGGATGCGATA
AGAGGGTGGAGATACTACACAGTTGAATCACCCACCAGCTTTCCCCGTCT
TTCACTCCTCAGCTTCAATGGTCTTCCTCGGAAAGGAAAGATAAGAGTAG
AAAAGATAACAACTACAGCTACTTTCACATCTTTCTAGTTTGATATTTAG
ACCTGGAGTAAAATGATAGGAATTCCTTGATCCTGGGTTCTATCCGGATA
AGAGTCTAGAATAAAGAGAGATTTCAAGACTTAATTTTGAATAAACTATC
TTGGTACTAGAATAAAGGCATAGGCCCTCCCAACAGGAAAAAAAAAGATT
TCAAAATCTTGTCTTTATATGTATACAGAAAGAAACTGAGGTACTGANGA
ATTAATAGAGTTGAATTTGTGCTTTATAAGTCTATGGATTTAATTTTTAA
NGTGCTTAAAAATTTAGCATGCTGTCTACCCAGTAGAACATTACACATAA
TTTAGCCTCAGCTAGATCATCTT

NNNNNNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCTGAGAAGCACCTGAAAAAATACTCAGCATCCTTAATCATCAGAG
AAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCAC
TCTGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACACAGTACTACTGG
AGGATCCTGCAATACATCTCCTGGGCATATATCCAGAAGATTCCCCAACC
GGTAAGAAGGACACATGCTCCACTATGGTCATAGCAGCCTTATTTATAAT
AGCCAGACACTGGAAAGAATCCAGGTGTCCATCGACGGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAGTAATATTCAGCTACTCAAAAG
AATGCATTTATGAAATTCCTAGGCAAATGGATGCACCTGGAGGGCATCAT
CCTGAGTGAGGTGATTCAATCACAAAAGAACTCACATGATATATACTCAC
TGATAAGTGGATATTAGCCCAGAAACTTTAAATACCCAAGATACNAGATA
CAATTTGCAAAACACATGAAACTCTAGAAAAACGAAGACCAAGTGTGGAC
ACTTTGCCCCCTCTTAGAATTGGAA

Query= MSMg01no516_c22.b1 MSMg01no516_c22.b1 CHROMAT_FILE:
MSMg01no516_c22.b1 PHD_FILE: MSMg01no516_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:48 2005
         (587 letters)



>mm_chr9_81576245_81577234
          Length = 990

 Score =  920 bits (476), Expect = 0.0
 Identities = 564/598 (94%), Gaps = 17/598 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatgctcatctagttccttccagtcctgct-agagacctgagtttctttatga 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 746 ggaattctatgctcatctagttccttccagtcctgctaagagacctgagtttctttatga 687

                                                                       
Query: 63  gtgttcacatgacattacactcatctccacctcagtgctaccaccaatacagctacaggg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtgttcacatgacattacactcatctccacctcagtgctaccaccaatacagctacaggg 627

                                                                       
Query: 123 atcagagcaacttcatttgctccttcaggtcagagggaacagtcctcaaatatctgaccc 182
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atcagagcaaattcatttgctccttcaggtcagagggaacagtcctcaaatatctgaccc 567

                                                                       
Query: 183 tttaaatatatctaaaaaatcactttgtttacatttactgctctttctaaagacaggatg 242
           |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 566 tttaaacatatctaaaaaatcactttgtttacatttattgctcttcctaaagacaggatg 507

                                                                       
Query: 243 cga-taagagggtggagatactac-acagttgaatcacccaccagctttccccgt-cttt 299
           | | ||||||||| |||||| ||  | ||||||||||||||||||||||||  || ||||
Sbjct: 506 c-agtaagagggtagagatattatga-agttgaatcacccaccagctttcca-gttcttt 450

                                                                       
Query: 300 cactcctcagcttcaatggtcttcctcggaaaggaaagataagagtagaaaagataacaa 359
           ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct: 449 cactcctcagcttcaatggtcttcctcagaaaagaaagataagagtggaaaagataacaa 390

                                                                       
Query: 360 ctacagctactttcacatctttctagtttgatatttagacctggagtaaaatgataggaa 419
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttacagctactttcacatctttctagtttgatatttagacctggagtaaaatgataggaa 330

                                                                       
Query: 420 ttcctt-gatcctgggttctatccggataagagtctagaataaagagagatttcaagact 478
           ||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcttttgatcctgggttctaccctgataagagtctagaataaagagagatttcaagact 270

                                                                       
Query: 479 taattttgaataaactatcttggtactagaataaaggcataggccctcccaacagga-aa 537
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct: 269 taattttgaataaactatcttggtactagaataaagggataggccctcccagcaggataa 210

                                                                     
Query: 538 aaaaaa--------gatttcaaaatcttgtctttatatgtatacagaaagaaactgag 587
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaaaaatataatcagatttcaaaatcttgtctttatatgtatacagaaagaaactgag 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 990
Length adjustment: 10
Effective length of query: 577
Effective length of database: 980
Effective search space:   565460
Effective search space used:   565460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)