Query= MSMg01no516_d03.b1 MSMg01no516_d03.b1 CHROMAT_FILE:
MSMg01no516_d03.b1 PHD_FILE: MSMg01no516_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:49 2005
(686 letters)
>mm_chr9_115978192_115979278
Length = 1087
Score = 758 bits (392), Expect = 0.0
Identities = 418/428 (97%), Gaps = 4/428 (0%)
Strand = Plus / Minus
Query: 260 ataaatcacaattgataatctgtcacaaagaaaaaaaatgttttctctaatggagtctga 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 ataaatcacaattgataatctgtcacaaagaaaaaaaatgttttctctaatggagtctga 1028
Query: 320 ctggctatacaaaccacttaaggacaggttccatgaccagcagaagatgccaacacaaag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ctggctatacaaaccacttaaggacaggttccatgaccagcagaagatgccaacacaaag 968
Query: 380 caaactcaatggtgattttggaagattttttttttcataatgctttgggcatcttaaaaa 439
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 967 caaactcaatggtgattttggaaga---tttttttcataatgctttgggaatcttaaaaa 911
Query: 440 ctttacatatcttttgcatatatctgtatctgtatctatatagatggctttctataagaa 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ctttacatatcttttgcatatatctgtatctgtatctatatagatggctttctataagaa 851
Query: 500 acggcagacgtcagaggtttgaggtgttaccatggcagcctccctacaatgaaccaaagt 559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 acggcagatgtcagaggtttgaggtgttaccatggcagcctccctacaatgaaccaaagt 791
Query: 560 gtagcttacagggtggattgtataaaagacaagccattgtgctccaaagctgttaagtac 619
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gtagcttacaaggtggattgtataaaagacaagccattgtgctccaaagctgttaagtac 731
Query: 620 ccacattaggaactacaccatgcatttctttaaattaacttgcttttaac-aattttaat 678
||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 730 tcacattaggaaatacaccatgcatttcttaaaattaacttgcttttaaccaattttaat 671
Query: 679 ttgtacct 686
||||||||
Sbjct: 670 ttgtacct 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_d03.g1 MSMg01no516_d03.g1 CHROMAT_FILE:
MSMg01no516_d03.g1 PHD_FILE: MSMg01no516_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:49 2005
(617 letters)
>mm_chr9_115833585_115834602
Length = 1018
Score = 1102 bits (570), Expect = 0.0
Identities = 606/618 (98%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 1 ttgacttcaagcctcaaagtcatgggctagcatttgggagacactggtttgggaatagag 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 201 ttgacttcaagcctcaaagtcatgggctaggattttggagacactggtttgggaatagag 260
Query: 61 catttaggtccaagaatgttggcttgtgatagatggtaaacatggcttagcctttctccc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttaggtccaagagtgttggcttgtgatagatggtaaacatggcttagcctttctccc 320
Query: 121 ttcctcacatacataccaccttgtgatgtaacactgctttctctcaagagtcgaagtttt 180
|||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 321 ttcctcacatacataccaccttgtgatgcaacactgttttctgtcaagagtcgaagtttt 380
Query: 181 tcctccatgacctccaatctggttctacttgtggcttgttctcacagtagaagaacagag 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctccttgacctccaatctggttctacttgtggcttgttctcacagtagaagaacagag 440
Query: 241 aagcgaagctgtgtgacctctagtctgaggtcgcaagtggctgggtgactattccctttt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 aagcgaagctgtgtgacctctagtctgaggtcgcaagtggttgggtgactattccctttt 500
Query: 301 ctatctttgatgctgccatcgatctgtgagcaagcccaggcaacgtcctgcataacgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatctttgatgctgccatcgatctgtgagcaagcccaggcaacgtcctgcataacgaga 560
Query: 361 agtg-tctggtattctcagtcacctctgctgagcatggctctgagacagcgtgccagctg 419
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggtctggtattctcagtcacctctgctgagcatggctctgagacagcgtgccagctg 620
Query: 420 cgtgcagtgcaccagcagtgagctcagaagacaccatttgaccctgataaacttcaagga 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cgtgcagtgcaccagcagtgagctcagaagacaccatttgaccctgctaaacttcaagga 680
Query: 480 aaaacactcttcttgattgaagctagtacaattggggaatcattatttatgaaactatag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaacactcttcttgattgaagctagtacaattggggaatcattatttatgaaactatag 740
Query: 540 gcagctactatgccctctcttgagactagtttgtacttaccttacccaaagtgaattctg 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 gcagctactatgccctctcttgagactagtttgtacttagcttacccaaagtgaattctg 800
Query: 600 tttgtctttttgctgtgt 617
||||||||||||||||||
Sbjct: 801 tttgtctttttgctgtgt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
