Query= MSMg01no516_i05.b1 MSMg01no516_i05.b1 CHROMAT_FILE:
MSMg01no516_i05.b1 PHD_FILE: MSMg01no516_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:16 2005
(402 letters)
>mm_chr9_67134040_67134841
Length = 802
Score = 677 bits (350), Expect = 0.0
Identities = 378/388 (97%), Gaps = 2/388 (0%)
Strand = Plus / Minus
Query: 5 gaattcccccaggattacaagccaagcagtagattgttaactagcgagtatttaaaaagt 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaattcccccaggaagaaaagccaagcagtagattgttaactagcgagtatttaaaaagt 525
Query: 65 tgtagccaaacacgccttttccaatgagtcatctcatccttgctctgaatcccctttaca 124
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 524 tgtagccaaacacgccttttccaatgagtcatgtcatccttgctccgaatcccctttaca 465
Query: 125 ccaaggccccgccccccaaaggagacccaaacttacatgacacatctgggatttttcttt 184
|||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct: 464 ccaaggccccgccccccaaaggagacccgaacttacatgacatatttgggatttttcttt 405
Query: 185 cttgaaaggtgacacagctggcgagctactttgagcccttgatcttagctgcagttggtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cttgaaaggtgacacagctggcgagctactttgagcccttgatcttagctgcagttggtg 345
Query: 245 tcgcctccaagatgctggaccatcaacaacagatgacagtgctggaccagaccaagactc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcgcctccaagatgctggaccatcaacaacagatgacagtgctggaccagaccaagactc 285
Query: 305 ttgcagagtctgccctgcagatgctgtatgcagccaaggaaggtggaggtaaccccaagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgcagagtctgccctgcagatgctgtatgcagccaaggaaggtggaggtaaccccaagg 225
Query: 365 tatgctttaagccatgggggatgggggg 392
|||||||||||||||||||| ||||||
Sbjct: 224 tatgctttaagccatggggg--gggggg 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_i05.g1 MSMg01no516_i05.g1 CHROMAT_FILE:
MSMg01no516_i05.g1 PHD_FILE: MSMg01no516_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:16 2005
(622 letters)
>mm_chr9_66937340_66938361
Length = 1022
Score = 1152 bits (596), Expect = 0.0
Identities = 617/626 (98%), Gaps = 4/626 (0%)
Strand = Plus / Plus
Query: 1 aaggatacttttgtctgtgtggtaagtttgagaccagcctgagctaaagagacctttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggatacttttgtctgtgtggtaagtttgagaccagcctgagctaaagagacctttatc 260
Query: 61 ttaaataaaattccaatccccattgttaagttaaatgttggcaaaggatttgagctatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaataaaattccaatccccattgttaagttaaatgttggcaaaggatttgagctatga 320
Query: 121 atggctttttttcctatcatttctatctcttccttcttttcacg----tttttttttttc 176
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atggcttttttttctatcatttctatctcttccttcttttcacgtttttttttttttttt 380
Query: 177 aatgtacattggtgttttgcttgcatgtttgtctgtgtggaggtgtcagatcccctgaaa 236
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtgcattggtgttttgcttgcatgtttgtctgtgtggaggtgtcagatcccctgaaa 440
Query: 237 ctggagtcacagacacctgtgagctgccatgtgggtgctggaaattgaagccagatcctc 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctggagtcacagacacctgtgagctgccatgtgggtgctggaaattgaagccaggtcctc 500
Query: 297 tggaagcagtcagtgctctcaacctctgagccatcatctctccaaaccctcatttcaagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaagcagtcagtgctctcaacctctgagccatcatctctccaaaccctcatttcaagt 560
Query: 357 tttaaatgtgagcttgggggtagagagatggctcagcagttaagagcacgttattgctct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaatgtgagcttgggggtagagagatggctcagcagttaagagcacgttattgctct 620
Query: 417 cacagaggacccagcattagttcccagtaccacacagtggtttataaccatgcccattca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacagaggacccagcattagttcccagtaccacacagtggtttataaccatgcccattca 680
Query: 477 tacctccattccaggggacccagggctggcttttaacctctgagagcaccaggcatgcac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacctccattccaggggacccagggctggcttttaacctctgagagcaccaggcatgcac 740
Query: 537 agggtgcacacacatacacacaagcaaaacactcatgcacataaaagaaaataagtctaa 596
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggtgcacatacatacacacaagcaaaacactcatgcacataaaagaaaataagtctaa 800
Query: 597 aaatagtgaaaccaaagtctcaaaaa 622
||||||||||||||||||||||||||
Sbjct: 801 aaatagtgaaaccaaagtctcaaaaa 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
