TTTCTCACCATAATTTGCGGCCTCTAAACGACTCCCANACCATAGACACC
GCGGAATTCTCTGTGNTCCTGCCTCTCTTTCCCTCTGTTTCTGTTTCTGT
CTCTGTCTCTCTCTGTCTCTGTGGTGTGGGTATGTGTTTGTGTGTGTGTA
GTGGTGTGTGTGTGTTTAGTGGNAAANNAAAAAANAAAAAATTAAATAAT
TAATAAATATAAAATATTTAATAAATAAAATAATAAAAGAATATTAAAAA
ATAATTATTAATTATTATATAAAAAGAAACATAAAAACAAATTTTAAAAA
AAAAATAAAAAATTTTTTTTATAAAAAAATAACAATAAACAAAATAAATA
AAAAACCCCCCCCCCCCACCATACACCCCCCACCCTTTAACTCCCACCCA
CACCCCCCCCCCCCCCCCCCCCCAACCACACCCCCCCCACCCCCCCCCAC
CCCCCCCCCCCCCCCCCCCCCCCCTCCACCCCCCCCCCCCCCCCCCCCCC
CCCCCCCACCCCCCACCCCCAACACCCCCCCCTCCCTCCACCCCCCCCCC
CCCCCCCCCCCTCCCCCCCCCCCATCCCCCACCTAAACCCCCCACCCCAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCTACCCCACCC
CCCCACCCCCTTCCATATTTAACAACACCCCACCCCCCCAAACCCCCACC
CCCCCCCCCCCCCCACACCCCACTCCCCCCCCCCACCCCCACACACAAAT
CACCCCACCCCCCCCCCCCCG

NNNTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTTTTTAGGGTTCT
ATTTATATTGTAACCTTCTGTCATTAATGAAACTTACTGCATTGACAAGA
GATTAGGAACTCGAATCTATGAAAGACATTTGAAATATTGACAGTAATAA
ATTTCTAAGAACTCCATTACAGTTTATTTAATCTGACATCTATTGACTTA
AATTTTTCATAAATATATAATAGGTCAGACAAGGAAACACTGGTGGAAGC
ATTTTTTTAAATCATATTTTAAAGCAAACAATCTAAAAGATGTCAGGTCA
CAACCCTTTTTATCTTTAATTAAAAAAAACTCATTTATGATTCTTTTTAA
AGGCAAAGTGTAAATACTCTCTAGATTGCCAATTTTCAAATGGCAAGGGC
TTAATTCTAGTGCCTTTATGATAAAAAATACAGTTTTAGAACATGACAAG
CATTTCTCTGTCACTCTGCTTTCTAATAGCACCTTGCCTTCACCCAGGGG
CACACACAGCCCATTGGTATAAAAACAAAGGTCAATGGAAGCCAGGAATG
GTCCTCAGTAAGATAGGTTTAAATATTTCCCCATAAAACCATGTTATTTT
ATGCCAACTTGAGAGGGAGACATATATTAGTTTTCTAGCGAAGCAGGAGT
ATTATGCCTTTTGTTGGGTAAAAGGAGGTATCCAATGGTGGAGAGATCTG
N

Query= MSMg01no516_k11.g1 MSMg01no516_k11.g1 CHROMAT_FILE:
MSMg01no516_k11.g1 PHD_FILE: MSMg01no516_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:28 2005
         (659 letters)



>mm_chr9_117243849_117244911
          Length = 1063

 Score = 1166 bits (603), Expect = 0.0
 Identities = 647/663 (97%), Gaps = 4/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagtttttagggttctatttatattgtaaccttctgtcattaatgaaacttactgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagtttttagggttctatttatattgtaaccttctgtcattaatgaaacttactgcat 260

                                                                       
Query: 61  tgacaagagattaggaactcgaatctatgaaagacatttgaaatattgacagtaataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaagagattaggaactcgaatctatgaaagacatttgaaatattgacagtaataaat 320

                                                                       
Query: 121 ttctaagaactccattacagtttatttaatctgacatctattgacttaaatttttcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaagaactccattacagtttatttaatctgacatctattgacttaaatttttcataa 380

                                                                       
Query: 181 atatataataggtcagacaaggaaacactggtggaagcatt--tttttaaatcatatttt 238
           ||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 381 atatataataggtaagacaaggaaacactggtggaagcattattttttaaatcatatttt 440

                                                                       
Query: 239 aaagcaaacaatctaaaagatgtcaggtcacaaccctttttatctttaattaaaaaaaac 298
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcacactatctaaaagatgtcaggtcacaaccctttttatctttaattaaaaaaaac 500

                                                                       
Query: 299 tcatttatgattctttttaaaggcaaagtgtaaatactctctagattgccaattttcaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatttatgattctttttaaaggcaaagtgtaaatactctctagattgccaattttcaaa 560

                                                                       
Query: 359 tggcaagggcttaattctagtgcctttatgataaaaaa--tacagttttagaacatgaca 416
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 561 tggcaagggcttaattctagtgcctttatgataaaaaaaatacagttttagaacatgaca 620

                                                                       
Query: 417 agcatttctctgtcactctgctttctaatagcaccttgccttcacccaggggcacacaca 476
           ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 621 agcatctctctgtcactctgctttctaatagcaccttatcttcacccaggggcacacaca 680

                                                                       
Query: 477 gcccattggtataaaaacaaaggtcaatggaagccaggaatggtcctcagtaagataggt 536
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 gcccattggtataaaaacaaaggtcaatggaagccaggaatggtcctcagaaagataggt 740

                                                                       
Query: 537 ttaaatatttccccataaaaccatgttattttatgccaacttgagagggagacatatatt 596
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 taaaatatttccccataaaaccatgttattttatgccaaattgagagggagacatatatt 800

                                                                       
Query: 597 agttttctagcgaagcaggagtattatgccttttgttgggtaaaaggaggtatccaatgg 656
           ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 801 agttttctagcaaagcaggagtattatgcctcttattgggtaaaaggaggtatccaatgg 860

              
Query: 657 tgg 659
           |||
Sbjct: 861 tgg 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1063
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1053
Effective search space:   683397
Effective search space used:   683397
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)