BAC Information

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BAC

Clone NameMSMg01-516O15
Chromosome9 (Build37)
Map Location 38,669,027 - 38,669,582
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26
Downstream geneOlfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516O15.T7 (MSMg01no516_o15.b1)MSMg01-516O15.TJ (MSMg01no516_o15.g1)
ACCAG588795AG588796
length747751
length of high quality
(start - end)		670 (55 - 724)556 (85 - 640)
definitionCHROMAT_FILE: MSMg01no516_o15.b1 PHD_FILE: MSMg01no516_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:49 2005CHROMAT_FILE: MSMg01no516_o15.g1 PHD_FILE: MSMg01no516_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTAGGTGTCTATAGCTATTTGTCTAAAGATGGGAC
CCTGTAAGATTTCCCCCATTCTACATTAATGTTTCTATTGATTTTGCCAT
TGTTCTGACTTTGCTTGTGCTATGGTTGCTAGAAATGTTTGTTTATTCTG
AGCTTCTGGGCTAATATCCACTTATCAGTGAGTGAATATCATGGGTATTC
TTTTGTGATTGGTTTACCTCACTCAGAATGATATTTTCTAGTTCCATCCA
TTTGTCAAAAATTTCATAAATTCATTGTTATTAATATCTGAGTAGTACTC
CATTGTGTAAAGGTACCACATTAGCTGTATCCAGTCCTCTATTGAGGGAC
TTCTGGTTTCTTTATAGGTCCTGGCTATTATAAATGAGGCTGTGATGAAC
ATAGTAGAACATGTGTCCTTCTGACATGTTGGAGCATCTTTTGGGTATAT
GCCCAGGAATGGATTGCTGGGTCCTCAGGTAGTATGTCCAATTTTCTGAG
GAACCACCAAACTGATTTCCAGAGTGGTTGTACCATCTTGTAATCTCACC
AGCAATGGAGTGGTGTTCTTTCTTCACATCCTAGCCAGCATCTGCTGTCA
TCTGAGTTTTTGATCTCAGGCACTCTGACTGGCGTGAGGTGGAATCTCAG
GGTTGGTTTAATTTGCATTTCCCNTGAGACTAAAGATGTTGAGAATT

TTATTTTCCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAAGACTCTAA
AAATAAGTAGCAAAATTAGAAGAACAGTAAGATGTGATAGTACTAAAACA
GCATGGAGAAAATATGTTGCAAATCTTTATATAAACAAATGAAGAAAGGT
GTTAAAATTAAATAGTTCTAGGTATAACCAAGATGAATATGCACTTTAAG
ACATTATTTCTCAACCCATTTGCCATGACCCCTTTGAGAGTTGTATATCA
AACATCCTACATGTCAGATATTTTCATAATATCAGCAGATTTACAGTTAT
CAACATATATAATTTTATATTTTGGGGATGCACAACATGAGGAAATTATT
AAAGGGTTGCAGCATTAGGAAGGATGAGAACCACTGCTTTAAGATATAGA
GATGGCCAGTCATGTGGCTTATGGGGTAAAAATACTTGACCTCTATACTT
ATGTCATGGATTCAATCCACAGAATTCGCATACCAGACAGAGAAAATTCA
AGTTGTCCTCCAAAGTCCACATGTACACATAACATATATGTTAACACACA
TGTCACATATACATATATGCTCACATACAGGCACACTGCAAATGCAGAGA
CNAAATAGAAAAATATATACATTAACCCTTCTTTTGAATTGCTTTGCAAG
GAAATTCTACGTTCTCATCCCATACTCAGAAACAAAAGTGTACATTTTTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_o15.g1 MSMg01no516_o15.g1 CHROMAT_FILE:
MSMg01no516_o15.g1 PHD_FILE: MSMg01no516_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:49 2005
         (556 letters)



>mm_chr9_38668827_38669782
          Length = 956

 Score = 1006 bits (520), Expect = 0.0
 Identities = 547/556 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaaaagactctaaaaataagtagcaaaattagaagaacagtaagatgtgatagtact 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaaaagactctagaaataagtagcaaaattagaagaacagtaagatgtgatagtact 260

                                                                       
Query: 61  aaaacagcatggagaaaatatgttgcaaatctttatataaacaaatgaagaaaggtgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacagcatggagaaaatatgttgcaaatctttatataaacaaatgaagaaaggtgtta 320

                                                                       
Query: 121 aaattaaatagttctaggtataaccaagatgaatatgcactttaagacattatttctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattaaatagttctaggtataaccaagatgaatatgcactttaagacattatttctcaa 380

                                                                       
Query: 181 cccatttgccatgacccctttgagagttgtatatcaaacatcctacatgtcagatatttt 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgtttgccatgacccctttgagagttgtatatcaaacatcctacatgtcagatatttt 440

                                                                       
Query: 241 cataatatcagcagatttacagttatcaacatatataattttatattttggggatgcaca 300
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 cataataccagcagatttacagttgtcaacatatataattttatattttggggatgcaca 500

                                                                       
Query: 301 acatgaggaaattattaaagggttgcagcattaggaaggatgagaaccactgctttaaga 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgaggaaattattaaatggttgcagcattaggaaggatgagaaccactgctttaaga 560

                                                                       
Query: 361 tatagagatggccagtcatgtggcttatggggtaaaaatacttgacctctatacttatgt 420
           |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 561 tatagagatggccagtcaggtggcttatggggtaaaaatacttgatctctaaacttatgt 620

                                                                       
Query: 421 catggattcaatccacagaattcgcataccagacagagaaaattcaagttgtcctccaaa 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggatccaatccacagaattcgcataccagacagagaaaattcaagttgtcctccaaa 680

                                                                       
Query: 481 gtccacatgtacacataacatatatgttaacacacatgtcacatatacatatatgctcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtccacatgtacacataacatatatgttaacacacatgtcacatatacatatatgctcac 740

                           
Query: 541 atacaggcacactgca 556
           ||||||||||||||||
Sbjct: 741 atacaggcacactgca 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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