Query= MSMg01no516_p15.b1 MSMg01no516_p15.b1 CHROMAT_FILE:
MSMg01no516_p15.b1 PHD_FILE: MSMg01no516_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:54 2005
(670 letters)
>mm_chr9_53688246_53689315
Length = 1070
Score = 1168 bits (604), Expect = 0.0
Identities = 652/670 (97%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 5 gaattctcattagtcgaaactgaaatggctaagaagcacttaaagaaatttccaacaccc 64
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gaattctcattagaggaaactgaaatggctaagaagtacttaaagaaatttccaacaccc 260
Query: 65 ctagctgtcagggaaatgcaaatcaaaactaatttgagattccatcttacacctgtcaga 124
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagctgtcagggaaacgcaaatcaaaactaatttgagattccatcttacacctgtcaga 320
Query: 125 atggctaagatcagcaacacaagtgacagctcatggtggtgaggatgtggagcaagggga 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgactaagatcagcaacacaagtgacagctcatggtggtgaggatgtggagcaagggga 380
Query: 185 acactcctccgttgctgatggaaatgcaaactcatagaaatcaataggcagctcttcaga 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactcctctgttgctgatggaaatgcaaactcatagaaatcaataggcagctcttcaga 440
Query: 245 aaactggcaatagatctacctcaagacccacctataccactcagggacatataccctccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactggcaatagatctacctcaagacccacctataccactcagggacatataccctccc 500
Query: 305 cacaaaaacccaaagacaaac----aaaaacatcaacaacaaaaactccaccccaaccta 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaaaaacccaaagacaaacaaataaaaacatcaacaacaaaaactccaccccaaccta 560
Query: 361 aaataaggacagttgctcaaccacattcattgaggctttattcataatagccagaaactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaataaggacagttgctcaaccacattcattgaggctttattcataatagccagaaactg 620
Query: 421 gaaacaaactagatggcgctcaaatgcataaagaagatgtggtgcttttacaccctgaac 480
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 621 gaaacaaactagatggcgctcaaatgcataaagaagatgtgatgcattcacaccctgaac 680
Query: 481 tattactcagccattaggagaaatgacgttatggaatttgcaggcaaatttcctatcacc 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tattactcagccattaggagaaatgacgttatagaatttgcaggcaaatttcctatcacc 740
Query: 541 ctccatcctggtatctctccagagttctgtgattcctcaagactccccccgcagacttca 600
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 741 ctccatcctggtatctctccagagttctgtgattcctcaagactcctcccgaagacttca 800
Query: 601 aatgaacatcgctgcaggctcagggatttactacagctgtcatttgtctaagcctaggta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatgaacatcgctgcaggctcagggatttactacagctgtcatttgtctaagcctaggta 860
Query: 661 ctgaaacttc 670
||||||||||
Sbjct: 861 ctgaaacttc 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_p15.g1 MSMg01no516_p15.g1 CHROMAT_FILE:
MSMg01no516_p15.g1 PHD_FILE: MSMg01no516_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:54 2005
(625 letters)
>mm_chr9_53771232_53772259
Length = 1028
Score = 1102 bits (570), Expect = 0.0
Identities = 610/630 (96%), Gaps = 15/630 (2%)
Strand = Plus / Minus
Query: 1 agagacaaggaaatgttgtgtgggcatagagggaaatggaagtcattaggtcaaagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agagacaaggaaatgttgtgtgggcatagagggaaatggaagtcattaggtcaaagacca 641
Query: 61 acagagaaaggacttacaaaggctattttgctttcaagttcagaactgtgtttacatctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 acagagaaaggacttacaaaggctattttgctttcaagttcagaactgtgtttacatctt 581
Query: 121 atttact---tttttttttctctgactgaatacatgaagggatatcactaaggaggaaat 177
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atttactttatttttttttctctgactgaatacatgaagggatatcactaaggaggaaat 521
Query: 178 aaggtatttttctttgtttttatgttttgttttacttctattttagaatgaataggttaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaggtatttttctttgtttttatgttttgttttacttctattttagaatgaataggttaa 461
Query: 238 gaatttctaaaataagtacatttatggaaaacacttaaaggcaaacatcaccaactttta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaatttctaaaataagtacatttatggaaaacacttaaaggcaaacatcaccaactttta 401
Query: 298 atctgatatagtttataatccacggactgcattttttatgagccaccacccaaactgatc 357
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 400 atctgatatagtttataatccacggactgcattttttatgagccaaaagccaaactgatc 341
Query: 358 taatctaatgaaaggtcaagaagccagaactataactggcttaaaggacatttaatccct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taatctaatgaaaggtcaagaagccagaactataactggcttaaaggacatttaatccct 281
Query: 418 tcttttaaaaagatgaacatcccacacacatgacctaatttgctcatgagacattttact 477
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 280 tcttttaaaaagatgaacatcccacacacatgacctaatccgctcatgagacattttact 221
Query: 478 tggaa-ttgtttttgttgttgttgtttgtttgt-ttgtttgtttgtttgtttgtttgttt 535
|||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 220 -ggaaattgtttttgttgttgtt---------tattgtttgtttgtttgtttgtttgttt 171
Query: 536 ttgcatagtgaaaatggtctttggttagtatttttttgagacacagtctcaaaaaaatat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttgcatagtgaaaatggtctttggttagtatttttttgagacacagtctcaaaaaaatat 111
Query: 596 atgtagctctggatggcttggtgctcagtc 625
||||||||||||||||||||||||||||||
Sbjct: 110 atgtagctctggatggcttggtgctcagtc 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1028
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1018
Effective search space: 626070
Effective search space used: 626070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
