BAC Information

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BAC

Clone NameMSMg01-517A18
Chromosome9 (Build37)
Map Location 39,146,793 - 39,265,376
singlet/doubletdoublet
Overlap geneOlfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1
Upstream geneOlfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312
Downstream geneOlfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517A18.T7 (MSMg01no517_a18.b1)MSMg01-517A18.TJ (MSMg01no517_a18.g1)
ACCAG588896AG588897
length767762
length of high quality
(start - end)		694 (36 - 729)649 (66 - 714)
definitionCHROMAT_FILE: MSMg01no517_a18.b1 PHD_FILE: MSMg01no517_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:00 2005CHROMAT_FILE: MSMg01no517_a18.g1 PHD_FILE: MSMg01no517_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(39,146,793 - 39,147,483)(39,264,728 - 39,265,376)
sequence
GTTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTT
TATATTCAACATGGGTATGTGAAGGGGGGTGGACTGTGAGAGGAAGTTTG
GTAAAGTTGATCTGAATTTGAAGCCCCAGAGATTCAGAAGGAATGGTAGA
AGCTTTGCCTACTCCCAGTACCAGGCCCCTGATACTTAGCCACAGTCCCC
CATAGAGAAAGTTATAGCCATCAGTCATGCAGGGGAGGTGCCCCCAAACC
CCTCCACATGTAAATCACTAACATCTCAGATCAAGCCAATAGGAAACACC
TGCTGTTAGACCCAAACCCATCCCAAAACTGTATGTAAGATCCTAACCAG
AAGGAATAAAGTTTTGTGAGAATTATTTCATTCCCTGAGAGCATGTATCT
TATAAGAGCTGTAACACTGCCTCAGAAGAGAAACCTCTCCTGAAGCTTTC
ACCAGTACAAGCTCCGTGCACCTCACTTGCTAGCCAGCCCTTCCCTGGCT
GTATATACCTACATACATATATGCATACATGCATGCATACATACAAATAT
ACATATATGTATGTCCACATTTATTTTTGAAAAGAATATAAATTTTTAGA
GAATTTGGAGAAATATAAGAGGAGTTGGTGAAGAGAGGGAAGGCTGGAAA
TGATGCAATTACAGTATGCTTTTATGAAATTCTCAAAAAAGTAGTCTAAT
AATAAAACATAGAAAATGTTTAGGAAGAATATTATGCAATCCATTGTCCC
TAGTCATTTCTATGTAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTACATATTAAAATAGAAGTTTAATACCAAATAG
CTACTATGATTTATTAAATAAAAAAGTGGAAATAAATTAAGCATGGACAA
ATAAATGTATTAACCTGCAAATTGCTTTTGAAATTAACATGTTATAAGAG
ATAAATTAACATGTTATAAGAGATTTTGATATTTGAAAGCATAAATGTTA
TACTTTAATAATCATACAGGAATGTTATGAAAGTTGCTTGTTTGAAAAAG
GGGAAAATTTCAAGCTCTTGTTCTATACTGCATCCTAAGTCTGTTGATAA
TTTGTTTTCAAAGATCTAGAGAAACGATTCTTTTCCAGTTTATATGTAAA
CCAAAAACTGTTCACTCTCTTTTCCTCCTTGACTCTTCATTCATACAACT
CTCTAGCTCTGTGATGGACACATTTGGTTACTTACAGTTCCTAAATTACA
TTGATTAACTGTCCATATTTTAGAATGCTGTTTATTCTACTTGAAAGAGT
GTCACTAAACAGTATTCCTTTATTAATTGGAAAGTATGTATATCCTTTTA
TACCCTATCTAAAACTGTTACAGACAGGGTGGGATTCTCCAAAATCTTTA
AATAGATTCATCCTTTCTACAATGTCCTTAAGATGTTGCAATTTCTGAAC
CTTGCACTTCCTGGTGAAATGAAGTACACAGCTAACCAGATGGCTACTTG
GAATTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_a18.b1 MSMg01no517_a18.b1 CHROMAT_FILE:
MSMg01no517_a18.b1 PHD_FILE: MSMg01no517_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:00 2005
         (694 letters)



>mm_chr9_39146590_39147683
          Length = 1094

 Score = 1259 bits (651), Expect = 0.0
 Identities = 681/691 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctattttatattcaacatgggtatgtgaaggggggtggactgtgagaggaagtt 63
           |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 204 ggaaatctattttatattcaacatgggtatgtgaagaagggtggactgtgagaggaagtt 263

                                                                       
Query: 64  tggtaaagttgatctgaatttgaagccccagagattcagaaggaatggtagaagctttgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tggtaaagttgatctgaatttgaagccccagagattcagaaggaatggtggaagctttgc 323

                                                                       
Query: 124 ctactcccagtaccaggcccctgatacttagccacagtcccccatagagaaagttatagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctactcccagtaccaggcccctgatacttagccacagtcccccatagagaaagttatagc 383

                                                                       
Query: 184 catcagtcatgcaggggaggtgcccccaaacccctccacatgtaaatcactaacatctca 243
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 catcagtcatgcaggggaggtgcccccaaacccctccacgtgtaaatcactaacatctca 443

                                                                       
Query: 244 gatcaagccaataggaaacacctgctgttagacccaaacccatcccaaaactgtatgtaa 303
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 444 gatcaagccaataggaaacacctgttgttagacccaaacctatcccaaaactgtatgtaa 503

                                                                       
Query: 304 gatcctaaccagaaggaataaagttttgtgagaattatttcattccctgagagcatgtat 363
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 gatcctaaccagaaggaataaagttttgtgggaattatttcattccctgagagcatgtat 563

                                                                       
Query: 364 cttataagagctgtaacactgcctcagaagagaaacctctcctgaagctttcaccagtac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttataagagctgtaacactgcctcagaagagaaacctctcctgaagctttcaccagtac 623

                                                                       
Query: 424 aagctccgtgcacctcacttgctagccagcccttccctggctgtatatacctacatacat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 aagctccgtgcacctcacttgctagccagcccttccctggctgtatataactacatacat 683

                                                                       
Query: 484 atatgcatacatgcatgcatacatacaaatatacatatatgtatgtccacatttattttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atatgcatacatgcatgcatacatacaaatatacatatatgtatgtccacatttattttt 743

                                                                       
Query: 544 gaaaagaatataaatttttagagaatttggagaaatataagaggagttggtgaagagagg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaaagaatataaatttttagagaatttggagaaatataagaggagttggtgaagagagg 803

                                                                       
Query: 604 gaaggctggaaatgatgcaattacagtatgcttttatgaaattctcaaaaaagtagtcta 663
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaaggctggaaatgatgcaattacagtatgcttttatgaaattctcaaaaaagtagtcta 863

                                          
Query: 664 ataataaaacatagaaaatgtttaggaagaa 694
           |||||||||||||||||||||||||||||||
Sbjct: 864 ataataaaacatagaaaatgtttaggaagaa 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_a18.g1 MSMg01no517_a18.g1 CHROMAT_FILE:
MSMg01no517_a18.g1 PHD_FILE: MSMg01no517_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:00 2005
         (649 letters)



>mm_chr9_39264528_39265576
          Length = 1049

 Score = 1170 bits (605), Expect = 0.0
 Identities = 638/649 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacatattaaaatagaagtttaataccaaatagctactatgatttattaaataaaaaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 attacatagtaaaatagaagtttaataccaaatagctactatgatttattaaataaaaaa 790

                                                                       
Query: 61  gtggaaataaattaagcatggacaaataaatgtattaacctgcaaattgcttttgaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtggaaataaattaagcatggacaaataaatgtattaacctgcaaattgcttttgaaatt 730

                                                                       
Query: 121 aacatgttataagagataaattaacatgttataagagattttgatatttgaaagcataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 729 aacatgttataagagataaattaacatgttataagagattttgatatttgaaaacataaa 670

                                                                       
Query: 181 tgttatactttaataatcatacaggaatgttatgaaagttgcttgtttgaaaaaggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 669 tgttatactttaataatcatacaggaatgttatgaaagttgcttgtttgaaaatggggaa 610

                                                                       
Query: 241 aatttcaagctcttgttctatactgcatcctaagtctgttgataatttgttttcaaagat 300
           || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 609 aaattcaagctcttggtctatactgcatcctaagtctgttgataatttgtttttaaagat 550

                                                                       
Query: 301 ctagagaaacgattcttttccagtttatatgtaaaccaaaaactgttcactctcttttcc 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctagagaaatgattcttttccagtttatatgtaaaccaaaaactgttcactctcttttcc 490

                                                                       
Query: 361 tccttgactcttcattcatacaactctctagctctgtgatggacacatttggttacttac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tccttgactcttcactcatacaactctctagctctgtgatggacacatttggttacttac 430

                                                                       
Query: 421 agttcctaaattacattgattaactgtccatattttagaatgctgtttattctacttgaa 480
           ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 429 agttcctaaattatattgattaaccgtccatattttagaatgctctttattctacttgaa 370

                                                                       
Query: 481 agagtgtcactaaacagtattcctttattaattggaaagtatgtatatccttttataccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agagtgtcactaaacagtattcctttattaattggaaagtatgtatatccttttataccc 310

                                                                       
Query: 541 tatctaaaactgttacagacagggtgggattctccaaaatctttaaatagattcatcctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatctaaaactgttacagacagggtgggattctccaaaatctttaaatagattcatcctt 250

                                                            
Query: 601 tctacaatgtccttaagatgttgcaatttctgaaccttgcacttcctgg 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tctacaatgtccttaagatgttgcaatttctgaaccttgcacttcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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