BAC Information

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BAC

Clone NameMSMg01-517E06
Chromosome9 (Build37)
Map Location 109,170,269 - 109,170,606
singlet/doubletsinglet
Overlap genenone
Upstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12
Downstream geneFbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517E06.T7 (MSMg01no517_e06.b1)MSMg01-517E06.TJ (MSMg01no517_e06.g1)
ACCAG589058AG589059
length752744
length of high quality
(start - end)
631 (38 - 668)342 (73 - 414)
definitionCHROMAT_FILE: MSMg01no517_e06.b1 PHD_FILE: MSMg01no517_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:17 2005CHROMAT_FILE: MSMg01no517_e06.g1 PHD_FILE: MSMg01no517_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
ATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCT
TTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCA
TTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGA
TCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATT
CATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTG
GTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTA
ATTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATC
TTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGC
TTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGAT
ATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTACCTG
GTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTG
AGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGC
TCTGTTGTTATGTCTCCCTTTTCAGNTCTGATTTTGTTAATTAGGATTTT
GN
TACTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTTTGTTGCAAAGCAAGCCTAGCTGG
GCAGTCTCTTCCCTCTAAGTTCCTGTAGAAAACTGCAGGTACAGCAAGGC
AGACAATTCCACCTAAGTCTTAAAATCCATTGTGCCAAGCACTCTAGGTC
TGTTTACCCTGCTCAAGGATGGGGAATGTAGGGCAGCAGGCATGGGGGAA
TAAAGGGAGAGGGAGAAAACAGGATTCCTCTCAGATTTCTGGTGCTCTGG
TCAGGTGGACAAGGGAGGACTGCCATAAGATTTCAACTTGGCCCCAGGTG
GGTTTCTGCCTGTGGTATGCCATGGAACCCTGCCTTCGAGGGGAGGGAGN
GGTGGGGGGTGNANCNNNNNNNNGNNNNNNNANGNNNNNGNGNNNNNNNG
NNNTNNNAGNNNNNNNGNNTNNNGNNNNGNNNNNNNNNGAANGAGNTGGN
NNNNTTGGNNGAGNTGAGANNAAAATTGGGAGGTTTGTGGGTAGATTAGT
TTATTTTTTTGGTTAAAGGGAGGAGAGAGGAGGATAGTGGTTGGTGGGTG
GNNTTTATGAGGTGAAGAATTTTTGTTTAATATGTGATTTAGTTGGGTTG
TTTAGTATTTGTATTGNTTAGTGTTTATGAGAAAGGTTGTAGGAAATTAA
NTAAATTGTTTAATTATTAGATTNGGATGTGAGTATATATGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_e06.g1 MSMg01no517_e06.g1 CHROMAT_FILE:
MSMg01no517_e06.g1 PHD_FILE: MSMg01no517_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:17 2005
         (342 letters)



>mm_chr9_109170069_109170810
          Length = 742

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattttgttgcaaagcaagcctagctgggcagtctcttccctctaagttcctgtagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattttgttgcaaagcaagcctagctgggcagtctcttccctctaagttcctgtagaaaa 260

                                                                       
Query: 61  ctgcaggtacagcaaggcagacaattccacctaagtcttaaaatccattgtgccaagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaggtacagcaaggcagacaattccacctaagtcttaaaatccattgtgccaagcac 320

                                                                       
Query: 121 tctaggtctgtttaccctgctcaaggatggggaatgtagggcagcaggcatgggggaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaggtctgtttaccctgctcaaggatggggaatgtagggcagcaggcatgggggaata 380

                                                                       
Query: 181 aagggagagggagaaaacaggattcctctcagatttctggtgctctggtcaggtggacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggagagggagaaaacaggattcctctcagatttctggtgctctggtcaggtggacaa 440

                                                                       
Query: 241 gggaggactgccataagatttcaacttggccccaggtgggtttctgcctgtggtatgcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaggactgccataagatttcaacttggccccaggtgggtttctgcctgtggtatgcca 500

                                                  
Query: 301 tggaaccctgccttcgaggggagggagnggtggggggtg 339
           ||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tggaaccctgccttcgaggggagggag-ggtggggggtg 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)