XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
AATAAACACATTGACCTTACACCTAACTGTCTGTAATCACAACACTGGCT
TTTTTTGGGGGGGGTTGTTGTTGTTGTTGTTATTTCTGTGTCCATTTTAT
TGCTTGAGTGGCATTTGGGGAGGAGAGAACTGTGTCCTTAGCCACACTCA
GCTATGACATGTGTATTCTGCAATTACAATTACTTCATGAGAATAAGCTG
CCAAGTGTGGGGTTGTTGGATCAAGAATGAGGAAAGTTTCTGGAACTGTT
GATATGTTTGTCAGCTGGTCACCAGACTAAGAAGTGGATGAAAGGGAAAC
TATGAGGAGTGAGCTGTTGCAGGGTCCTTTACTTCAGCTGTATGGTCTGC
TGAAGAGGCCTTTCTGGGGCTGGAGACGTGGCTCGGTCAGTAGCAGGCTT
ACTAGGGTAAGCACAAGGACACTAGCCTGACCTTCAGACTCCACAGAAAG
ATGCCATGGCGGCATTCACGGCTGGTGTGAGTAGTTCCCCCCTGGCCTCC
ACGTGCATGCATGCATGTACGTGTGCACAGGGACATTTAAATTCCTAAGG
AGATTGTTCTGAACCTTAATCTCATTAGTGAGCCTGGAATGGTGTTTCAA
GGTTGAATCAATATGAATGGATGACGGTGGACCTAAAGGAACACCTTCCC
AAATCAGCCTTTAAAAGCGCTTATTGAAAACTGTCACCAACATGCCTTGT
AAGTGTCTTTTTCGCCN

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGGATGTTTTGAGTTAGGATCTTTTTGCATTT
TCCATTTTCTTTGATTGTTGTGCCGATGTTCTCTATGGAATCTTCTGCAC
CTGAGATTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTCGCATCT
ATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCGTTGCCTCACT
TTTTGTTTTCTTTATGGTGTCTACTTCCCTTTATAGGTCTTGTGTGGTTT
TGTTCAATTCCATCACCTGTTTGGTTGTGTTTTCCTGTTTTTCTTTAAGG
ACTTCTCTCTCTTTAGCAGTGTTCTCCTGTATTTCTTTAAGTGAGTTATT
AAGGTCCTTCTTGATGTCCTCTACCATCATCATGAGATATGCTTTTAAAT
CTGAGTCTAGCTTTTCAGGTGTGTTGGGGTATCCAGGACTGGCTGAGATG
GGAGTGCTGGGTTCTGATGATGGTGAGTGGTCTTGGTTTCTGTTAGTAAG
ATTGTTACGTTTGCCTTTCTCTATCTGGTAATCTCTGGAGTTAGTTGTTA
TAGTTGTCTCTGGTTAGAGCTTGTTCCTCCCGTGGTTCTGTTAGCCTCTG
TCAGCAGACCTGGGAGACTAGCTCTCTCCTGAGTCTCAGTGGGCAGAGTT
TTCTCTGCAGGCAAGCTCTGCTCTTGCAGGGAAGTGCACAGATATCTGGC
ATTCC

Query= MSMg01no517_e14.b1 MSMg01no517_e14.b1 CHROMAT_FILE:
MSMg01no517_e14.b1 PHD_FILE: MSMg01no517_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:19 2005
         (586 letters)



>mm_chr9_121932708_121933692
          Length = 985

 Score = 1083 bits (560), Expect = 0.0
 Identities = 577/586 (98%), Gaps = 7/586 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttaataaacacattgaccttacacctaactgtctgtaatcacaacactggct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 785 ggaattccttaataaacacattgaccttacacctaactgtctgtaatcacaacactggc- 727

                                                                       
Query: 64  ttttttggggggg---gttgttgttgttgttgttatttctgtgtccattttattgcttga 120
              ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ---tttggggggggttgttgttgttgttgttgttatttctgtgtccattttattgcttga 670

                                                                       
Query: 121 gtggcatttggggaggagagaactgtgtccttagccacactcagctatgacatgtgtatt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtggcatttggggaggagaggactgtgtccttagccacactcagctatgacatgtgtatt 610

                                                                       
Query: 181 ctgcaattacaattacttcatgagaataagctgccaagtgtggggttgttggatcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctgcaattacaattacttcatgagaataagctgccaagtgtggggttgttggatcaagaa 550

                                                                       
Query: 241 tgaggaaagtttctggaactgttgatatgtttgtcagctggtcaccagactaagaagtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgaggaaagtttctggaactgttgatatgtttgtcagctggtcaccagactaagaagtgg 490

                                                                       
Query: 301 atgaaagggaaactatgaggagtgagctgttgcagggtcctttacttcagctgtatggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atgaaagggaaactatgaggagtgagctgttgcagggtcctttacttcagctgtatggtc 430

                                                                       
Query: 361 tgctgaagaggcctttctggggctggagacgtggctcggtcagtagcaggcttactaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 tgctgaagaggcctttctggggctggagacgtggctcggtcagtagcgggcttactaggg 370

                                                                       
Query: 421 taagcacaaggacactagcctgaccttcagactccacagaaagatgccatggcggcattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taagcacaaggacactagcctgaccttcagactccacagaaagatgccatggcggcattc 310

                                                                       
Query: 481 acggctggtgtgagtagttcccccctggcctccacgtgcatgcatgcatgtacgtgtgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acggctggtgtgagtagttcccccctggcctccacgtgcatgcatgcatgtacgtgtgca 250

                                                         
Query: 541 cagggacatttaaattcctaaggagattgttctgaaccttaatctc 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cagggacatttaaattcctaaggagattgttctgaaccttaatctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)