BAC Information

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BAC

Clone NameMSMg01-517J02
Chromosome9 (Build37)
Map Location 78,440,645 - 78,441,124
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5
Downstream geneCd109, LOC384957, EG666456, LOC436085, LOC235509, LOC666479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517J02.T7 (MSMg01no517_j02.b1)MSMg01-517J02.TJ (MSMg01no517_j02.g1)
ACCAG589288AG589289
length741778
length of high quality
(start - end)
616 (39 - 654)132 (71 - 202)
definitionCHROMAT_FILE: MSMg01no517_j02.b1 PHD_FILE: MSMg01no517_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:42 2005CHROMAT_FILE: MSMg01no517_j02.g1 PHD_FILE: MSMg01no517_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
ACCAAAATGGAAAGGCTGACACAGCAGGACTGTGGTTTGACACCTACCCA
GAACACAGTTTACCCTTAATTATCTCATCTGCCAGAGTCACTTAATTTTG
AGTTGTTTTGTATGCACTTTTAGTTCACTTTTCAAACTCATTCTGTTTCT
CCTATTTCCTGGGTGAGTCTCCCAACAGTTGTACTGTGTTCTCCACTGAT
TTTTACAAGATTTGCAGATTTTGATTTATTTTAATTTCTCTGAATTAGAT
AAAATTATATGTATTCTGAAATTTTTCATTCTAGTTAATTTTCTTAATGT
GTATGAGTGTTTTGCCTGCATGTATATCTTTCTGTGCACCTTGAGTGCAT
CTAGTGACAGAAAGGCTAGAAGAAGGTGGGGAACTGTGTGGAGTCCTGAT
CTCCAGGTAAAATCCTGTGTGCTCCTGGACTCACAGGGCTGTGAGTACTT
ACACAGGAAATATATATATATACACACACACATATATATATGAATGTGTA
TATGTATGTGCATATATATGTATATATGCATGTATAAATGTGTATGTGTG
TATGCACACACATATACATATACACAAACATACACACATACTGTTTGTGC
TGTCTGATGCCTCTAACCTTAGCACTTGAGAGGCAGAAGCAGGAGTATCC
TGAGTTTGAGGGCACCCCGAGCTACATAAGACACTGTCTCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCTGTGCTTTCTTTTTTTTTTTTTTT
AATTTTATTTAGATGCTGGGAACTGAATCCAGGGCTAAGACACATTCGAA
AATGTTAAATAGAGCTTAGATTTTTTTTCCCTTGGGGGTGGGGGGTGGGG
GGNNCTNNNNNNNTNNNNNNGNGNNNNNNNNNGNNNNNNNNNNNNNNGNN
NNNNNGNNNNNNNNGNNGGGGTGGGGNGGGTTTGTGGGTTTGGNTGTTGG
TGTTTGGGTTGGTGGTTTGGGTTGCGGTTGTGTTTGGTGGTTGTGTGCTG
TGGTTTGTTTGTGTTTGTTCCGGTTTCGCCTTCGGTCCTCTCCCCCCTGT
TTTTTTCCCCCCCCCCTCCCCCTCCCTTGCTTTTGTTGTGCTTCGTGGTT
GTTCCGGCCCCCTTTTCTCGTCCCTTTTCCGCCCCCCCCCTTTCGCCGCC
GGCTTTTTTCGCCGTCTCGCCTGTTCCCTCGTGGTGGTTTGGGTGGCGTT
CCGTTCTCTTTTTTTCCCCCTCCGTGCTTCGTGTTGCGATCCCCTTTTGT
TGGGGGGTCGGTTGCTCGCTTCTTTGCTGTCCGCGGTGTTAGTTTTTTCT
CCTTCGTCTGCTGCCTCCCCTTCGTCCCCTCCTTATGCGGTTGTGTGGCC
GTCGGCTGGTCGGGCCTTCCGTTTTTGATTCGCGTTGCTATGTGTCTGTT
TTTCGCGCGCGTTTTCTCTCTTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_j02.b1 MSMg01no517_j02.b1 CHROMAT_FILE:
MSMg01no517_j02.b1 PHD_FILE: MSMg01no517_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:42 2005
         (616 letters)



>mm_chr9_78440629_78441644
          Length = 1016

 Score =  897 bits (464), Expect = 0.0
 Identities = 476/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaccaaaatggaaaggctgacacagcaggactgtggtttgacacctacccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaattctgaccaaaatggaaaggctgacacagcaggactgtggtttgacacctacccaga 437

                                                                       
Query: 65  acacagtttacccttaattatctcatctgccagagtcacttaattttgagttgttttgta 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 acacagtttacccttaattatctcatctgccagagtctcttaattttgagttgttttgta 377

                                                                       
Query: 125 tgcacttttagttcacttttcaaactcattctgtttctcctatttcctgggtgagtctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgcacttttagttcacttttcaaactcattctgtttctcctatttcctgggtgagtctcc 317

                                                                       
Query: 185 caacagttgtactgtgttctccactgatttttacaagatttgcagattttgatttatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caacagttgtactgtgttctccactgatttttacaagatttgcagattttgatttatttt 257

                                                                       
Query: 245 aatttctctgaattagataaaattatatgtattctgaaatttttcattctagttaatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aatttctctgaattagataaaattatatgtattctgaaatttttcattctagttaatttt 197

                                                                       
Query: 305 cttaatgtgtatgagtgttttgcctgcatgtatatctttctgtgcaccttgagtgcatct 364
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 196 cttaatgtgaatgagtgttttgcctgcatgtatatctttctgtgcatcttgagtgcatct 137

                                                                       
Query: 365 agtgacagaaaggctagaagaaggtggggaactgtgtggagtcctgatctccaggtaaaa 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 136 agtgacagaaaggctagaagaaggtgggaaactgtgtggagtcctgatctccaggtaaaa 77

                                                                       
Query: 425 tcctgtgtgctcctggactcacagggctgtgagtacttacacaggaaatatatatatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tcctgtgtgctcctggactcacagggctgtgagtacttacacaggaaatatatatatata 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)