Query= MSMg01no517_j23.b1 MSMg01no517_j23.b1 CHROMAT_FILE:
MSMg01no517_j23.b1 PHD_FILE: MSMg01no517_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:46 2005
(630 letters)
>mm_chr9_43247041_43248070
Length = 1030
Score = 862 bits (446), Expect = 0.0
Identities = 458/462 (99%)
Strand = Plus / Minus
Query: 166 ctgacagtttttccagccctcatgacactgtgggcagataatttgggggatgtaagcact 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 ctgacagtttttccagccctcatgacactgtgggcagataatttgggggatgtaagcact 971
Query: 226 gccctagctaggctatatggaaagcccagtagcagctctgggctccatcacctgatacag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gccctagctaggctatatggaaagcccagtagcagctctgggctccatcacctgatacag 911
Query: 286 tagcaagctcttcctcctgagaattgtaacaacagcaacaacgaaaaatgtatccagcta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 tagcaagctcttcctcctgagaattgtaacaacagcaacaacgaaaaatgtatccagcta 851
Query: 346 ttactgaatgtcctctggggggcggggagcagttaacaccccctcaaaatcggaaactac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttactgaatgtcctctggggggcggggagcagttaacaccccctcaaaatcggaaactac 791
Query: 406 tttgttaaaggaattttccaacaatcaatcaacttgtaacagagacagaactgagatctg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tttgttaaaggaattttccaacaatcaatcaacttgtaacagagacagaactgagatctg 731
Query: 466 tcagcatctaagacttttctctctcctgcccccatacaacggcttgagagtctcatctgg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tcagcatctaagacttttctctctcctgcccccatacaacggcttgagagtctcatctgg 671
Query: 526 gaaaatagcaggacaatgtcattatattttccacttttatcgctccccaccccaacattt 585
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 670 gaaaatagcaggacgatgtcattatattttccacttttatcactccccaccccaacattt 611
Query: 586 aatctatgcgttactgagattggctaatagattgctctgctc 627
|||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 610 aatctatgcgttgctgagatcggctaatagattgctctgctc 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_j23.g1 MSMg01no517_j23.g1 CHROMAT_FILE:
MSMg01no517_j23.g1 PHD_FILE: MSMg01no517_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:46 2005
(631 letters)
>mm_chr9_43067733_43068763
Length = 1031
Score = 1151 bits (595), Expect = 0.0
Identities = 624/635 (98%), Gaps = 5/635 (0%)
Strand = Plus / Plus
Query: 1 ccaatgcctagtgcagtgtctggcatagagtcatggctgtcggagcagttccagtgaagc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ccaatgcctagtgcagtgtctggcatagagtcatggctctcggagcagttccagtgaagc 260
Query: 61 aggtaaataaatgaaaataaagaaaataatgaaaataaggaacagagtgaaggaggcgca 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaaatgaatgaaaataaagaaaataatgaaaataaggaacagagtgaaggaggcgca 320
Query: 121 gcttcctgtctgcaccatggcatcggtgtcacctcttgcacagtcccatatggaacttat 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcctgtctgcaccacggcatcggtgtcacctcttgcacagtcccatatggaacttat 380
Query: 181 gacttgagcccttcctgccctgggtgtctggtgagtcctaacctctgtccctgcctactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttgagcccttcctgccctgggtgtctggtgagtcctaacctctgtccctgcctactg 440
Query: 241 agggggaaggctccagggagcaagtgcagccaaacgcagagtttgaaagagtcttagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggggaaggctccagggagcaagtgcagccaaacgcagagtttgaaagagtcttagtga 500
Query: 301 acaagagattgatggtcatctggatccaccatgggagaattggtccctggtcgccgagaa 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 acaagcgattgatggtcatctggatccaccatgggagaattggtccctggtcgctgagaa 560
Query: 361 ggaaaagcctccgaattctaagcactggcctctcgggtcccacttcccactaacacagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaaagcctccgaattctaagcactggcctctcgggtcccacttcccactaacacagtg 620
Query: 421 agcagaaaatggattggtttttctctgcttcacagatgaggagattgtggtgtgagacgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcagaaaatggattggtttttctctgcttcacagatgaggagattgtggtgtgagacgt 680
Query: 481 ggaattaagctttacccaaggtgacagagctgcccagggaccaggttcaggctgaagggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaattaagctttacccaaggtgacagagctgcccagggaccaggttcaggctgaagggt 740
Query: 541 tattctt---gttgttgttgttgttgttttgtt-gttttgttttttgagacagggtttct 596
||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct: 741 tattctttttgttgttgttgttgttgttttgtttgttt-gtttttcgagacagggtttct 799
Query: 597 ctgtgtagccctggctgtcctggaactcactctgt 631
|||||||||||||||||||||||||||||||||||
Sbjct: 800 ctgtgtagccctggctgtcctggaactcactctgt 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
