Query= MSMg01no517_k18.b1 MSMg01no517_k18.b1 CHROMAT_FILE:
MSMg01no517_k18.b1 PHD_FILE: MSMg01no517_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:50 2005
(660 letters)
>mm_chr9_118349730_118350789
Length = 1060
Score = 1145 bits (592), Expect = 0.0
Identities = 604/608 (99%)
Strand = Plus / Minus
Query: 5 gaattccattgatcggttctgtgtcaacatggggtcttggagattctagggaagtatcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaattccattgatcggttctgtgtcaacatggggtcttggagattctagggaagtatcag 552
Query: 65 cccaataacttgagtacaataatgacttggaatgtaaaattattaagtataaaatatctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cccaataacttgagtacaataatgacttggaatgtaaaattattaagtataaaatatctg 492
Query: 125 tgcagggtacgtactggaagaaaatgagcgaatgaggttctgaagacccaagtcacaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgcagggtacgtactggaagaaaatgagcgaatgaggttctgaagacccaagtcacaaac 432
Query: 185 aatagaacctcatggaaaattccagcatggaaactatttatcctggagaggactaggctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatagaacctcatggaaaattccagcatggaaactatttatcctggagaggactaggctc 372
Query: 245 tatgcttaaggatgtaaaaataaaagctacagaaatctgatcagtgatccagctaagaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatgcttaaggatgtaaaaataaaagctacagaaatctgatcagtgatccagctaagaga 312
Query: 305 ggttgaaatctaaccctgcctatgttgatatgtagaagttttatctatgactgaacttgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggttgaaatctaaccctgcctatgttgatatgtagaagttttatctatgactgaacttgt 252
Query: 365 tttaaataaaccagtttattaagacatcacagtaagaaaacatgcttactgggcagtgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttaaataaaccagtttattaagacatcacagtaagaaaacatgcttactgggcagtgtg 192
Query: 425 ctgagaataaatgattgttcaatgctcacttgtaagtggaccatctacacctcaccccac 484
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 191 ctgagaataaatgactgttcaatgctcacttgtaagtggaccggctacacctcaccccac 132
Query: 485 ccccacccggaggttcagggaacatcacagaagagggaaggaaaggttagaacctgtaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccccacccggaggttcagggaacatcacagaagagggaaggaaaggttagaacctgtaga 72
Query: 545 tctgaggggggctgggctgtgaaatgtcgtcttccggacacaaggcaccactgcgctcat 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 71 tctgaggggggctgggctgtgaaatgtcgtcttccggacacaaggcaccactgcgcacat 12
Query: 605 ggtctgca 612
||||||||
Sbjct: 11 ggtctgca 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_k18.g1 MSMg01no517_k18.g1 CHROMAT_FILE:
MSMg01no517_k18.g1 PHD_FILE: MSMg01no517_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:50 2005
(648 letters)
>mm_chr9_118293438_118294487
Length = 1050
Score = 1174 bits (607), Expect = 0.0
Identities = 639/653 (97%), Gaps = 8/653 (1%)
Strand = Plus / Plus
Query: 1 atctttagggagactcatcacttcatataagaaacattagaattaatttttttaatgtgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atctttagggagactcatcacttcatataagaaacattagaattaatttttt-aatgtgg 259
Query: 61 ttacaaactggctttctccaatacagtcatgagtgatttgacttcatctctgcatctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttacaaactggctttctccaatacagtcatgagtgatttgacttcatctctgcatctctc 319
Query: 121 tgagctgagtcagagcctcccatccattaagagcaagaggagactttgcaaggttactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgagctgagtcagagcctcccatccattaagagcaagaggagactttgcaaggttactgt 379
Query: 181 gaacatcagatgtgaaatatcttaactatccaaagcctgccacatcagtcctcaacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaacatcagatgtgaaatatcttaactatccaaagcctgccacatcagtcctcaacaaat 439
Query: 241 ggcgttttcataatgatgcttcctgtctcctggtgttagagttcctttatccctttcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcgttttcataatgatgcttcctgtctcctggtgttagagttcctttatccctttcaaa 499
Query: 301 gctgccc-----gggcttccttatcttgtgtaatcttcacaagggaggcaggctacaggt 355
||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctgccctcaaag--cttccttatcttgtgtaatcttcacaagggaggcaggctacaggt 557
Query: 356 tatctctacaagctgaagtgccagacagctaataggatggattcgagataattagtcctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatctctacaagctgaagtgccagacagctaataggatggattcgagataattagtcctt 617
Query: 416 ctctgtatgaaacaatcctgtagagggaagaatatgaagcagtcatctaaactggggaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctctgtatgaaacaatcctgtagagggaagaatatgaagcagtcatctaaactggggaaa 677
Query: 476 caaaacaaaacaacccaaacagcacagggctagacgcagacatccactttggtcgaactg 535
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 678 caaaacaaaacaacccaaacagcacagggctagacgcagccatccactctggtcgaactg 737
Query: 536 caaccaaaatgccaggaggagacaaaagtcacgtgcaaacaccgtgcacacagcagcaga 595
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 738 caaccaaaatgccaggaggagacaaaagtcacaagcaaacactgtgcacacagcagcaga 797
Query: 596 aacgcttgtcactaaatgaagagcgccactgtgtttgggtgtcagtgtgatgg 648
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 798 aacgcttgtcactaaatgaagagcgccgctgtgtttgggtgtcagtgtgatgg 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
