Query= MSMg01no518_f18.b1 MSMg01no518_f18.b1 CHROMAT_FILE:
MSMg01no518_f18.b1 PHD_FILE: MSMg01no518_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:44 2005
(603 letters)
>mm_chr9_115840826_115841827
Length = 1002
Score = 1083 bits (560), Expect = 0.0
Identities = 593/604 (98%), Gaps = 2/604 (0%)
Strand = Plus / Plus
Query: 1 cagcaaagtc-cacatggatcttttcctgtgggagtttgtgatctagaacaggaaataaa 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagcaaagtcacacatggatcttttcctgtgggagtttgtgatctagaacaggaaataaa 259
Query: 60 cctctacacagacaaccacaataaagcaacaagatgacgttcttgcacagatgccaatcc 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 cctctacacagacaaccacaataaagcaacaagatgacattcttgcacagatgccaatcc 319
Query: 120 tgagtgggtggaaaaatcccctgccattgtgggtactgagccttgtgaatgaactctgcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgagtgggtggaaaaatcccctgccattgtgggtactgagccttgtgaatgaactctgcc 379
Query: 180 tccctcacattagcatcttctgcctttggggcctcttgtgctgctcatcctgggtggaca 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcccttacattagcatcttctgcctttggggcctcttgtgctgctcatcctgggtggaca 439
Query: 240 cctcaccaagcactttcttaccctttgagaacacttcctgcctcctgtcacaatctaaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 cctcaccaagcactttcttaccctttgagaacacttcctgcctcctgtcacaacctaatg 499
Query: 300 tcacatgcaaatgtgtatgtgtttatagatctaaataatacaatcttctgttggctaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcacatgcaaatgtgtatgtgtttatagatctaaataatacaatcttctgttggctaata 559
Query: 360 tttattatgacctttatataataaatgatataatttattatcatgtccactaacacttat 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 560 tttattatgacctttatataataaatgatatgatttattatcatgtccactaatacttat 619
Query: 420 atagtgcactgggttgttttaagacttcgtgtgatttggtgcatttgtgtaaggacaagg 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 atagtgcactgggttgttttaagacttcgtgtgttttggtgcatttgtgtaaggacaagg 679
Query: 480 ttatctctatctgaagcaggacttgaagttggagttatcagtttttgagcaaggagggcc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 -tatctctatctgaagcaggacttgaagttggagttatcagtttttgagcaaggagggcc 738
Query: 540 cttgccaaaacaaatgttgagcttctgtgacatgctggaagacaagcaatcgagaagctg 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 739 cttgccaaaacaaatgttgagcttctgtgacatgctggaagacaagcagtcgagaagctg 798
Query: 600 gtag 603
||||
Sbjct: 799 gtag 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space: 588256
Effective search space used: 588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_f18.g1 MSMg01no518_f18.g1 CHROMAT_FILE:
MSMg01no518_f18.g1 PHD_FILE: MSMg01no518_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:44 2005
(620 letters)
>mm_chr9_116015211_116016232
Length = 1022
Score = 1110 bits (574), Expect = 0.0
Identities = 610/622 (98%), Gaps = 2/622 (0%)
Strand = Plus / Minus
Query: 1 aaagggagaaaaa-aatcgtgagggtgaaaggtggcggtagagaaatctcacatacagag 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 721 aaagggagaaaaataatcgtgagggtgaaaggtggcggtagagaaatctcacatacacag 662
Query: 60 acaggaacaggcagaatctgccactgaagttacgggttgactggtggtgaggagacacac 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 661 acaggaacaggcagaatctgccactgaagtcacgggttgactggtggtgaggagacacac 602
Query: 120 cacccagcagacagacagacagacaaaaagatgctctacagagctgagagggacttgaaa 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 601 cacccagcagacagacagacagacaaaaagatgctctgcagagctgagagggacttgaaa 542
Query: 180 agcaacaatccagtctcttcttaagggttgggggctttctctgctctgaagggctttctt 239
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 541 agcaacaatccagactcttcttaagggctgggggctttctctgctctgaagggctttctt 482
Query: 240 cccctaatttaaggaagaaattgaagaaagataggatagctcattggcacaactcttacg 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 481 cccctaatttaaggaagaaattgaagaaagataggacagctcattggcacaactcttacg 422
Query: 300 tactgtgtcctgatccagccttgaacttgatgggccactccatctggagacctactggta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tactgtgtcctgatccagccttgaacttgatgggccactccatctggagacctactggta 362
Query: 360 ggagaaaaagcctaaaggtctttgtcttaagacgcccggctttgtatcaggccaagaggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggagaaaaagcctaaaggtctttgtcttaagacgcccggctttgtatcaggccaagaggg 302
Query: 420 tgcaaaagaagtcagccatcttggaagttcaccaccttaactacatacccactagctctc 479
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 301 tgcaaaagaagccagccatcttgaaagttcaccaccttaactacatacccactacctctc 242
Query: 480 tctgtctgccttttagggaatctgtctgattctt-agtctctccagaggatctgagctca 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 tctgtctgccttttagggaatctgtctgattcttaagtctctccagaggatctgagctca 182
Query: 539 gttcccagcacccacagggtagctcaaaaccctgtaactccagtgccaggggatctgatg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttcccagcacccacagggtagctcaaaaccctgtaactccagtgccaggggatctgatg 122
Query: 599 ccctcttctggcctctataggc 620
||||||||||||||||| ||||
Sbjct: 121 ccctcttctggcctctacaggc 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1022
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1012
Effective search space: 617320
Effective search space used: 617320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
