BAC Information

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BAC

Clone NameMSMg01-518J22
Chromosome9 (Build37)
Map Location 74,827,355 - 75,027,424
singlet/doubletdoublet
Overlap geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Upstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
Downstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518J22.T7 (MSMg01no518_j22.b1)MSMg01-518J22.TJ (MSMg01no518_j22.g1)
ACCAG590085AG590086
length785783
length of high quality
(start - end)		671 (46 - 716)639 (75 - 713)
definitionCHROMAT_FILE: MSMg01no518_j22.b1 PHD_FILE: MSMg01no518_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:04 2005CHROMAT_FILE: MSMg01no518_j22.g1 PHD_FILE: MSMg01no518_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,026,758 - 75,027,424)(74,827,355 - 74,827,993)
sequence
ACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGAATGTATACAGCTGCACTGACTTCCAGTTTCTTAGTGGAACT
GACTTTTAAGCCTGTGAGAGAATTCTGTGAATGCAGGAGAGAAGGAAGCA
TGACCCCAAATTAAATCACTGTGACAACCTCATCTACGGAGCTCTCCATG
GACTATAGCTTTGGTCGCAGTACTTCATGTACTGATTAAACACATTCCTG
TTTGTTTGTTTCCAGAGACAGTCTTGCTATGTGGCTCTGCCTAACCTGGC
ACTAGAGCTATGCAGTCTATCCTGCTTCCTCGGTGCTAGGATTATGGGTG
TGTACCACTATACTAAGGCTACAAGAAAGTCTGGATAAATTTCCATTACA
TACCTTTCTAGTAAGGAATAATAAAACAAAACAAAGCAGTTAGTATTCTC
TTAAGTTATTCATATAACTAAAGCAGTGGCACACATATTTTTTATTCCAA
TATCATTGTTTTAGGCTATTCATAAAATCCAATAAAATATTGTGTGTGTA
GGTGTGTGTATGTCATAGTATACATGTTGGAGCAAGAGGACAACTTATGG
GAATCGATTCTCTTCATCCATCATGTGTCTCAGGGATTGAATTTAAGTCC
TTAGGTCTGGTGATGAGCCATCTTATTAACTATGATATTCATAAATTATT
TTGACCAAATAATGATTCACAAAGCCATTCTTTANGAGAATGGTGTCTTA
ANGAGCTTGACCTTCCTGCTCTATAGTTTCTGTCT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCACCAGCCTGGACCACACATTGTG
ATACAATAGTGGTAACGATTTGATCTGGCACTTGGGATCTGAGGTGTGCC
TGGACAGGCTGTGGGCAGCAGCCCTTCTTCAGTGAAGTGATTTCAGGCTA
TGTTGGGATCTCAATGAAAAACTGTGTGGAAGCACACAGATTAATAGCCC
AGCGTACTTAGTGATGTGCGACTGAAATACCCAAATGTCAACATATTTTC
TCAGTATTAGGTAGATTTCAAGTTTAAGACTTTGCCCCAAGCTTCACATT
TCTAGATATAATACATTTCTCAGTTTTCTGAGCTGTGTCATGCTTTGGAA
AGAAATGGAAGGTTGAATCAGAAAAAGGAGGCAGAGGTGAGGACTGTCAG
ACAGCAGTAGGCAATGGGCTAGAGAGTGAGGGAAGTCTGAGGAGGGAGAG
CAGCCTCCTGCCTTGTGCACCACCCTGCAAACACTGGACTGCCTTGGCCT
GCCTGGTAGCCTCTGGGTAGTAACTTGTTTGTGGCTTCTCTTGGGGTTCC
TCAGCAGGAACTTAGCAAGGGCAACCTTGTCATTGCTACCCATGTTAACT
AGCAGGGACAGCCAGCTCTCTGGGAGCCAGGAAATGAATATCACAAATAG
GATGATTAAGACTGTCTCAGAGTGCAGAAATTTCAGAACAGAAATTGGGT
GGGACTATGAGGCTTAATTTTTGAAACTCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_j22.b1 MSMg01no518_j22.b1 CHROMAT_FILE:
MSMg01no518_j22.b1 PHD_FILE: MSMg01no518_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:04 2005
         (671 letters)



>mm_chr9_75026414_75027484
          Length = 1071

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcaagaatgtatacagctgcactgacttccagtttcttagtggaactgacttttaa 64
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 gaattcaagaatgtaaacagctgcactgacttccagtttcttagtggaactgacttttaa 952

                                                                        
Query: 65   gcctgtgagagaattctgtgaatgcaggagagaaggaagcatgaccccaaattaaatcac 124
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  gcctgtgagagaattctgtaaatgcaggagagaaggaagcatgaccccaaattaaatcac 892

                                                                        
Query: 125  tgtgacaacctcatctacggagctctccatggactatagctttggtcgcagtacttcatg 184
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  tgtgacaacctcatctactgagctctccatggactatagctttggtcgcagtacttcatg 832

                                                                        
Query: 185  tactgattaaacacattcctgtttgtttgtttccagagacagtcttgctatgtggctctg 244
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 831  tactgattaaacacattcctgtttgtttgtttccggagacagtcttgctatgtggctctg 772

                                                                        
Query: 245  cctaacctggcactagagctatgcagtctatcctgcttcctcggtgctaggattatgggt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  cctaacctggcactagagctatgcagtctatcctgcttcctcggtgctaggattatgggt 712

                                                                        
Query: 305  gtgtaccactatactaaggctacaagaaagtctggataaatttccattacatacctttct 364
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  gtgtaccactatactgaggctacaagaaagtctggataaatttccattacatacctttct 652

                                                                        
Query: 365  agtaaggaataataaaacaaaacaaagcagttagtattctcttaagttattcatataact 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  agtaaggaataataaaacaaaacaaagcagttagtattctcttaagttattcatataact 592

                                                                        
Query: 425  aaagcagtggcacacatattttttattccaatatcattgttttaggctattcataaaatc 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  aaagcagtggcacacatattttttattccaatatcattgttttaggctattcataaaatc 532

                                                                        
Query: 485  caataaaatattgtgtgtgtaggtgtgtgtatgtcatagtatacatgttggagcaagagg 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  caataaaatattgtgtgtgtaggtgtgtgtatgtcatagtatacatgttggagcaagagg 472

                                                                        
Query: 545  acaacttatgggaatcgattctcttcatccatcatgtgtctcagggattgaatttaagtc 604
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 471  acaacttatgggaatcgattcacttcatccatcatgtgtctcagggattgaatttaagtc 412

                                                                        
Query: 605  cttaggtctggtgatgagccatcttattaactatgatattcataaattattttgaccaaa 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  cttaggtctggtgatgagccatcttattaactatgatattcataaattattttgaccaaa 352

                   
Query: 665  taatgat 671
            |||||||
Sbjct: 351  taatgat 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_j22.g1 MSMg01no518_j22.g1 CHROMAT_FILE:
MSMg01no518_j22.g1 PHD_FILE: MSMg01no518_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:04 2005
         (639 letters)



>mm_chr9_74827155_74828193
          Length = 1039

 Score = 1189 bits (615), Expect = 0.0
 Identities = 633/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaccagcctggaccacacattgtgatacaatagtggtaacgatttgatctggcacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaccagcctggaccacacattgtgatacaatagtggtaacgatttgatctggcacttg 260

                                                                       
Query: 61  ggatctgaggtgtgcctggacaggctgtgggcagcagcccttcttcagtgaagtgatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatctgaggtgtgcctggacaggctgtgggcagcagcccttcttcagtgaagtgatttc 320

                                                                       
Query: 121 aggctatgttgggatctcaatgaaaaactgtgtggaagcacacagattaatagcccagcg 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctatgttgagatctcaatgaaaaactgtgtggaagcacacagattaatagcccagcg 380

                                                                       
Query: 181 tacttagtgatgtgcgactgaaatacccaaatgtcaacatattttctcagtattaggtag 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcagtgatgtgcgactgaaatacccaaatgtcaacatattttctcagtattaggtag 440

                                                                       
Query: 241 atttcaagtttaagactttgccccaagcttcacatttctagatataatacatttctcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcaagtttaagactttgccccaagcttcacatttctagatataatacatttctcagt 500

                                                                       
Query: 301 tttctgagctgtgtcatgctttggaaagaaatggaaggttgaatcagaaaaaggaggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctgagctgtgtcatgctttggaaagaaatggaaggttgaatcagaaaaaggaggcag 560

                                                                       
Query: 361 aggtgaggactgtcagacagcagtaggcaatgggctagagagtgagggaagtctgaggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgaggactgtcagacagcagtaggcaatgggctagagagtgagggaagtctgaggag 620

                                                                       
Query: 421 ggagagcagcctcctgccttgtgcaccaccctgcaaacactggactgccttggcctgcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagagcagcctcctgccttgtgcaccaccctgcaaacactggactgccttggcctgcct 680

                                                                       
Query: 481 ggtagcctctgggtagtaacttgtttgtggcttctcttggggttcctcagcaggaactta 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 ggtagcctctgggttgtaacttgtttgtggcttctcttggggttcctcagcaggaaccta 740

                                                                       
Query: 541 gcaagggcaaccttgtcattgctacccatgttaactagcagggacagccagctctctggg 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 gcaagggcgaccttgtcattgctacccatgttaactagcagggacagccagctgtctggg 800

                                                  
Query: 601 agccaggaaatgaatatcacaaataggatgattaagact 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agccaggaaatgaatatcacaaataggatgattaagact 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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