BAC Information

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BAC

Clone NameMSMg01-519B01
Chromosome9 (Build37)
Map Location 107,746,598 - 107,747,267
singlet/doubletsinglet
Overlap geneRbm6
Upstream geneVprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneMon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519B01.T7 (MSMg01no519_b01.b1)MSMg01-519B01.TJ (MSMg01no519_b01.g1)
ACCAG590426AG590427
length725802
length of high quality
(start - end)		666 (60 - 725)---
definitionCHROMAT_FILE: MSMg01no519_b01.b1 PHD_FILE: MSMg01no519_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:40 2005CHROMAT_FILE: MSMg01no519_b01.g1 PHD_FILE: MSMg01no519_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGAGTTCCCCCTTCTGAGTAAAGAAGAGATATCTTAATGAGTAAACAGG
CGATTCTCAACCATCTGTTACTCAGCCCTAGAGGATCTAAGAAGTCCCAG
CCTTCTACTGTCTTCTCTATCTACTAGGCACATACTTGGAGCATAGATAC
ACATATAGGCAAAAAGCCACAGACATAAATGAAATAAATAGAAGAAATAT
ATGATGAAGAGTGAATATCCCTCTTGACACACATATAAACACACTCATTC
ATGTATGCACATGTGTCATCCCTCCTCCACCCCATACACAAATTGTACTT
AAAAGGAAGAGAGAGACAGAAGGTCTGCCTAAGGTATATAAAAAGTTCAG
TTTCTGTTTGTGCCTACTTGAGACTCTATCCCAAAACTACTATGACACCT
GAACTAAGCCAATTGTTTTAGATTGGGTAATGTCCTGCCAGAGTTGAAAT
AGGTGTTACTTATAATGGGTAGATTTAGAATATATAGAGTTGATACTTTT
AGTTTCATTACAAAGCCAGGAATGATGATACACATTTGTAATTCCACTGA
GAAGACCAAGGTATAGAATCAAAAGTTCCAGGTCAATTTGGGGCATAGAG
TAAAACTCTGTTTACTTCTCCCTACTCCCTCCCCCCAGAAAAAAACATTA
AAAACCATCTACTGAAAATTTGCCC

CGTGTATATTTTTTGAGGAGAGACTTTCGTTCTCTTCTTGTTTTAGTTAT
TTTTTTCCCCTTTTTTTCTCCAAGCACCGAGCAGGGCTGTGGGATAGTAT
ATTTAGAAGAGAATAATTTGGGTGTTNCCCTATANNNNNCACCGCCTAAT
GAAACTAGTTGGGGGTTAGGTCCCCTGGGNCGGGGCCCGTCCCTTGTGTT
TCTCCTCCAACAATTTTTAAGGGTTGGAACAACTTATTAGAAAAAGGATA
CCCGCCGGGGAATTCTACAAAAGGTTAACCAATTCATCCCAACCCCCAAC
AACTGGCCCCATTTTCACCCCTTGGAAAGAATGGCTTAAGGAAGGAAAGG
CCCTGGCGAAAATTCCCTTGGGAAACCAAAGAAAGAGAACTTCCCAAGGC
CCTTGGGTGGGGGAAAAAGGGCCGGGGAAAAAAGGTGGGGGGAAAAAGGG
GAAAAAAGAAAAAAACACCCCCCCTAGAGGGAGAAAGGTGGGGGCCAAAA
ACNAAGGCGCGGCGCCAAAAAGATAAATAGGGGTGTGGCGCACCCCCGCG
AAAAAAAAAAACGGCCCCCCCCCCCCCACCAGGGGGTGGTGTGTGTTTGT
TTTTTTTTTTTTTGACAAAAAAAAAAACTCTTTTTGTTGTGTTTGTTTTT
TGGGNAAAGATATTTTTTTTTTTTTTTGGGGGTGGGGGGCGCGCCCCCCC
CCCCCCAAAAAGGAGGGGGTTGGTGTGTGTGTTAAAAAATAAAAATAGAT
GGGGTGGGGGGGGCCCCAAAAAAACAAAAAAAAAAAAAATAAGGGGGGGG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_b01.b1 MSMg01no519_b01.b1 CHROMAT_FILE:
MSMg01no519_b01.b1 PHD_FILE: MSMg01no519_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:40 2005
         (666 letters)



>mm_chr9_107746219_107747289
          Length = 1071

 Score = 1218 bits (630), Expect = 0.0
 Identities = 659/670 (98%), Gaps = 5/670 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    ccttctgagtaaagaagagatatcttaatgagtaaacaggcgattctcaaccatctgtta 61
            |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |
Sbjct: 1049 ccttctgagtaaagaagagatatcttaatgagtaaacagatgattctcaaccatctgtaa 990

                                                                        
Query: 62   ctcagccctagaggatctaagaagtcccagccttctactgtcttctctatctactaggca 121
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 989  ctcagccctagaggatctaagaagtcccagtcttctactgtcttctctatctactaggca 930

                                                                        
Query: 122  catacttggagcatagatacacatataggcaaaaagccacagacataaatgaaataaata 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  catacttggagcatagatacacatataggcaaaaagccacagacataaatgaaataaata 870

                                                                        
Query: 182  gaagaaatatatgatgaagagtgaatatccctcttg--acacacatataa--acacactc 237
            ||||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||||
Sbjct: 869  gaagaaatatatgatgaagagtgaatatccctcttgacacacacacataaacacacactc 810

                                                                        
Query: 238  attcatgtatgcacatgtgtcatccctcctccaccccatacacaaattgtacttaaaagg 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 809  attcatgtatgcacatgtgtcatccctcctccaccccatacacaaattgtacttaaaaga 750

                                                                        
Query: 298  aagagagagacagaaggtctgcctaaggtatataaaaagttcagtttctgtttgtgccta 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  aagagagagacagaaggtctgcctaaggtatataaaaagttcagtttctgtttgtgccta 690

                                                                        
Query: 358  cttgagactctatcccaaaactactatgacacctgaactaagccaattgttttagattgg 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  cttgagactctatcccaaaactactatgacacctgaactaagccaattgttttagattgg 630

                                                                        
Query: 418  gtaatgtcctgccagagttgaaataggtgttacttataatgggtagatttagaatatata 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  gtaatgtcctgccagagttgaaataggtgttacttataatgggtagatttagaatatata 570

                                                                        
Query: 478  gagttgatacttttagtttcattacaaagccaggaatgatgatacacatttgtaattcca 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  gagttgatacttttagtttcattacaaagccaggaatgatgatacacatttgtaattcca 510

                                                                        
Query: 538  ctgagaagaccaaggtatagaatcaaaagttccaggtcaatttggggcatagagtaaaac 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509  ctgagaagaccaaggtatagaatcaaaagttccaggtcaatttggggcatagagtaaaac 450

                                                                        
Query: 598  tctgtttacttctccctactccct-ccccccagaaaaaaacattaaaaaccatctactga 656
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 449  tctgtttacttctccctactccctcccccccagaaaaaaacattaaaaaccatctactga 390

                      
Query: 657  aaatttgccc 666
            ||||||||||
Sbjct: 389  aaatttgccc 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1071
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1061
Effective search space:   696016
Effective search space used:   696016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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