Query= MSMg01no519_i04.b1 MSMg01no519_i04.b1 CHROMAT_FILE:
MSMg01no519_i04.b1 PHD_FILE: MSMg01no519_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:14 2005
(671 letters)
>mm_chr9_63023718_63024788
Length = 1071
Score = 1243 bits (643), Expect = 0.0
Identities = 661/667 (99%)
Strand = Plus / Minus
Query: 5 gaattccaaagttgtacccttcactccctcatctaatgaggttatgaccaaatgctcatt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattccaaagctgtacccttcactccctcatctaatgaggttatgaccaaatgctcatt 812
Query: 65 ataattgctttagactccttttaattttcaagcttattaatcataagaagagttatttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ataattgctttagactccttttaattttcaagcttattaatcataagaagagttatttaa 752
Query: 125 aattgcataaattaatcttagattaaaagcccatcaaagcctggaaacaattaagaataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aattgcataaattaatcttagattaaaagcccatcaaagcctggaaacaattaagaataa 692
Query: 185 gtaggatttccctggggcagcaagttttattttaatattgtagtcaggtggatatcagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtaggatttccctggggcagcaagttttattttaatattgtagtcaggtggatatcagaa 632
Query: 245 ccttgaagtatggtagtgattaatgtatgcaaaatttaaatgagattttttttaaatggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ccttgaagtatggtagtgattaatgtatgcaaaatttaaatgagattttttttaaatggc 572
Query: 305 aagtctaaatcacttattgacctaactgtaggctttagccgcactggctgtcatatggtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aagtctaaatcacttattgacctaactgtaggctttagccgcactggctgtcatatggtg 512
Query: 365 taactgtttactaatcaacattttaattaccgtgtgtgctggcagaccctaggacaaaca 424
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 511 caactgtttactaatcaacattttaattaccgcgtgtgctggcagaccctaggacaaaca 452
Query: 425 aaacccaacatctcagattgttgccgccaagtctcttgcccaaagatatcaggaagatga 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaacccagcatctcagattgttgccgccaagtctcttgcccaaagatatcaggaagatga 392
Query: 485 gaagatggagggatgagaccacttaaggccatagcatagcaggggctccagcaacactgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaagatggagggatgagaccacttaaggccatagcatagcaggggctccagcaacactgt 332
Query: 545 cccgcctaacgttgtactgggcaccctaaacactctatacagtgtgtagtcctgggttcc 604
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cctgcctaaggttgtactgggcaccctaaacactctatacagtgtgtagtcctgggttcc 272
Query: 605 taggtcttctccttgttcatgttaaggaggtaggtgtttccagaaagaaatctgattgca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taggtcttctccttgttcatgttaaggaggtaggtgtttccagaaagaaatctgattgca 212
Query: 665 cttcagg 671
|||||||
Sbjct: 211 cttcagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_i04.g1 MSMg01no519_i04.g1 CHROMAT_FILE:
MSMg01no519_i04.g1 PHD_FILE: MSMg01no519_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:15 2005
(511 letters)
>mm_chr9_62870893_62871803
Length = 911
Score = 779 bits (403), Expect = 0.0
Identities = 487/523 (93%), Gaps = 20/523 (3%)
Strand = Plus / Plus
Query: 1 aggttatcaagcttgcagggcagacacttatacccagtgaactctttccgcagcccaaga 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 197 aggttatcaagcttgcagggcagacact--tacccagtgaactctttccgcagccgaaga 254
Query: 61 gattttttacatgccatgccatgtatgcacacacaaaatcaagcaattgataaatgtgaa 120
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 255 gattttttacatgccatgccatgtatgcatacataaaatcaagcaattgataaatgtgaa 314
Query: 121 aaatgaagattagtttggtaggtttttttg-ttttgttttggttttggttttttgttttt 179
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct: 315 aaatgaagattagtttggtag-----tttgtttttgttttgtttttggttttttgttttt 369
Query: 180 ggttttttt-gagacagggtttctctgtatagccctggctgtcctggaactcactttgta 238
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 370 -gtttttttcgagacagggtttctctgtatagccctggctgtcctggaactcactctgta 428
Query: 239 gaccaggctggcct-----t--gaaatctgcctgcctctgcctcccaagtgctgggatta 291
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct: 429 gaccaggctggcctcgaactcagaaatccacctgcctctgcctcccaagtgctgggatta 488
Query: 292 aaggcgtgcg---ccaccaccgctgggctgaaggttagttttaaaaatatgtattgttag 348
|||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 489 aaggtgtgcgccaccaccaccgcccggctgaagattagttttaaaaatatgtattgttag 548
Query: 349 tgtgatgtatatgatgcacatgtatgggtggggtactacaggtcttccttaggctaagga 408
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtgatgtatatggtgcacatatatgggtggggtactacaggtcttccttaggctaagga 608
Query: 409 ctaaggcaagtgggaagtgctgtctctagttgcatatgtagcagaggatggcctaggcgg 468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 609 ctaaggcaagtgggaagtgctgtctctagttgcatatgtaacagaggatggcctaggtgg 668
Query: 469 ccatcaatgggaggagaggccccagtacaggggaatgccaggg 511
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 669 ccatcaatgggagcagaggccccagtacaggggaatgccaggg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
