BAC Information

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BAC

Clone NameMSMg01-519N08
Chromosome9 (Build37)
Map Location 39,463,197 - 39,463,774
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961
Downstream geneGA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519N08.T7 (MSMg01no519_n08.b1)MSMg01-519N08.TJ (MSMg01no519_n08.g1)
ACCAG591010AG591011
length747742
length of high quality
(start - end)		598 (42 - 639)573 (73 - 645)
definitionCHROMAT_FILE: MSMg01no519_n08.b1 PHD_FILE: MSMg01no519_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:40 2005CHROMAT_FILE: MSMg01no519_n08.g1 PHD_FILE: MSMg01no519_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGCTATTTGATTTTCTG
GAGTCGACCCTCTTGAGTTCTTTATATATATTGGATATTATTCCCCTATT
TGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTAGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGG
TCCCATTTGTCAATCCTCGATCTTAAAGCACGAGCCATTGCTGTTCTATT
CAGGAATTTTTTTCCCTGTGCCCATATCTTCGAGACTTTTCCCCACTTTC
TCGTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCA
CTTAGATTTGACCTCAGTATAGGAGAGAGGAATGGGTCAATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTATTTTCCACTAGATGATTTTAGCTCCCTTGTCGAAATTCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGCCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCACTATACCAGTACCATGCAGTTATTATCANCATTGCTCTGT
AGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTACTTTTATCC
TTGAGAAGAGCTTTTGTTATCCTANGTTTTTTGTTATTCCAGATGAA

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCTAGTTTTCATAATTGTTATACAAC
TGCTCAGTGCCCTCTGTGGAGTGAATAGACATTCTTTAGTTCTCTAGGGC
ATATAAAATTTGGAATTCTTTCTAGTTACCTATATAGGAGTGAAACAGAT
TTATTTGTGGTTTCTTAGCCACACTTTGTTACTTTCAAATTACATTTGAG
AGGATTTCACTTAACTTTTCTGTGTAGGCTCCCCATGTAGTCTGTGTTTT
TCAGAGGTGTTGATCTCTCCTTCAAGACATTTAGGAAAGAAATAGAGAAG
AGTTGGTTACAGTTTCACAGTCATATGTACTGTGTGTGGCACTGGCATGT
GCCGTCAGCTTCCTGGACTTCAATTTCCTCCCTTTCAGTTCTGAGTAGCA
GTACTTTATTCATGAGAATACTGGAAGAACATGGTGATATCTATTAAGCT
AATAAACAGCAATTATAATGAAAACTCAGAGAGCTGAAAAGGGTTTGAAA
AATTTTAAACAATTACAATCATATCCAGCGATATTATGAAACAAGTGATG
ATCTGAAAATATTAAGGACTTAGCACAATGCCTTCACATGGTAGACCTTG
TGGAAATACTCCATATACTATTCATTTTTGTTAATTGACAGCAGAATTAA
TTCACNATATTAACTAACTATAATGCTCAAGGAATTATCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_n08.g1 MSMg01no519_n08.g1 CHROMAT_FILE:
MSMg01no519_n08.g1 PHD_FILE: MSMg01no519_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:40 2005
         (573 letters)



>mm_chr9_39463002_39463974
          Length = 973

 Score = 1002 bits (518), Expect = 0.0
 Identities = 560/578 (96%), Gaps = 7/578 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   cctagttttcataattgttatacaactgctcagtgccctctgtggagtgaatagacattc 62
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 196 cctagttttcataatcgttatacaattgctcagtgccctctgtggagtgaatagacattc 255

                                                                       
Query: 63  tttagttctctagggcatata-------aaatttggaattctttctagttacctatatag 115
           ||||||||||||||| |||||       ||||||||||||||||||| |||||| |||||
Sbjct: 256 tttagttctctagggtatatagcgagacaaatttggaattctttctatttacctgtatag 315

                                                                       
Query: 116 gagtgaaacagatttatttgtggtttcttagccacactttgttactttcaaattacattt 175
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagtgaaacagatttatttgtgatttcttagccacactttgttactttcaaattacattt 375

                                                                       
Query: 176 gagaggatttcacttaacttttctgtgtaggctccccatgtagtctgtgtttttcagagg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagaggatttcacttaacttttctgtgtaggctccccatgtagtctgtgtttttcagagg 435

                                                                       
Query: 236 tgttgatctctccttcaagacatttaggaaagaaatagagaagagttggttacagtttca 295
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 tgttgatctctccttcaagacatttaggaaagaaatagagaagaggtggttacagtttca 495

                                                                       
Query: 296 cagtcatatgtactgtgtgtggcactggcatgtgccgtcagcttcctggacttcaatttc 355
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 cagtcatatgtactgtgtgtggcactggcatgtgccttcagcttcctggacttcaatttc 555

                                                                       
Query: 356 ctccctttcagttctgagtagcagtactttattcatgagaatactggaagaacatggtga 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctccctttcagttctgagtagcagtactttattcatgagaatactggaagaacatggtga 615

                                                                       
Query: 416 tatctattaagctaataaacagcaattataatgaaaactcagagagctgaaaagggtttg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tatctattaagctaataaacagcaattataatgaaaactcagagagctgaaaagggtttg 675

                                                                       
Query: 476 aaaaattttaaacaattacaatcatatccagcgatattatgaaacaagtgatgatctgaa 535
           |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 676 aaaaattttaaataattacaatcatatccagcaatattacgaaacaagtgatgatctgaa 735

                                                 
Query: 536 aatattaaggacttagcacaatgccttcacatggtaga 573
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aatattaaggacttagcacaatgccttcacatggtaga 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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