Query= MSMg01no520_d15.b1 MSMg01no520_d15.b1 CHROMAT_FILE:
MSMg01no520_d15.b1 PHD_FILE: MSMg01no520_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:13 2005
(713 letters)
>mm_chr9_52451360_52452476
Length = 1117
Score = 1261 bits (652), Expect = 0.0
Identities = 697/714 (97%), Gaps = 4/714 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcctctctctacctcccatcttgtggtaagagctctgggataaccaatgtgtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ggaattctcctctctctacctcccatcttgtggtaagagctctgggataaccaatgtgtg 1013
Query: 64 tactgtagtacctggctcagcttgggttctgggaattcggactcaggtactcatatttac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tactgtagtacctggctcagcttgggttctgggaattcggactcaggtactcatatttac 953
Query: 124 gtgtcaagtactttactcactgagcagtcttaccatcaatggataaaattacttttgtct 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 952 gtgtcaagtactttactcactgagcagtcttactatcaatggataaaattacttttgtct 893
Query: 184 gagcactttataaattcctttagctgacccacattataggtctctacttgatgttgctga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gagcactttataaattcctttagctgacccacattataggtctctacttgatgttgctga 833
Query: 244 cgcctctgttcaactgctgccaggaagtctgtagtaaactgtacacttgcgatgctgtgt 303
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 832 cacctctgttcaactgctgccaggaagtctgcagtaaactgtacacttgcgatgctgtgt 773
Query: 304 gggcctgcctctcccccaagttgcccagcatctggagctagttcttatacactgccatta 363
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 772 gggcctgcctctccccccagttgcccagcatctggagccagttcttatacactgccatta 713
Query: 364 ggctgttctagatgaacattatctggaaatttgcattaaactgaaaatataccctgggaa 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 712 ggctgttctagatgaacattatctggaaatttgcattaaagtgaaaatataccctgggaa 653
Query: 424 atttcacatgaagaaaaatcaaaaagatactctgatttaaaatagacat----acacatt 479
||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct: 652 atttcacatgaagaaaaatcaaaaagatactctgatttaaaatagacgttttaacacgtt 593
Query: 480 acatttgcttataacccattggatagaaacagtaacttagcagcacctagtttcaaaatg 539
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acgtttgcttacaacccgttggatagaaacagtaacttagcagcacctagtttcaaaatg 533
Query: 540 agttccccacacacagaagaaattataatagaagatttactaagcaaagaaattaatgcc 599
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 532 agttcctcacacacagaagaaattataatagaagatttactaagcaaaggaattaatgcc 473
Query: 600 agagtcagctactagagatagtacaagagactcacacattgagaacctcctggtagacct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agagtcagctactagagatagtacaagagactcacacattgagaacctcctggtagacct 413
Query: 660 gaggcaaggaagtcttgactcccaacatctcagcatggttatcaagcaatactg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaggcaaggaagtcttgactcccaacatctcagcatggttatcaagcaatactg 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1117
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1107
Effective search space: 778221
Effective search space used: 778221
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_d15.g1 MSMg01no520_d15.g1 CHROMAT_FILE:
MSMg01no520_d15.g1 PHD_FILE: MSMg01no520_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:13 2005
(636 letters)
>mm_chr9_52274522_52275558
Length = 1037
Score = 1158 bits (599), Expect = 0.0
Identities = 629/641 (98%), Gaps = 5/641 (0%)
Strand = Plus / Plus
Query: 1 tctttctttccctcttgccttttccatttcctgttctccgtccactcttgcc-tgtctct 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctttctttccctcttgccttttccatttcctgttctccgtccactcttgccctgtctct 260
Query: 60 cctttatttattcttctttctccaatctctcttctacccatacctctaccaggagcaaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttatttattcttctttctccaatctctcttctacccatacctctaccaggagcaaga 320
Query: 120 aagcacctatatctggggagacacttatctctaaatcaattgcaacgaataatctcaaca 179
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aagtacctatatctggggagacacttatctctaaatcaactgcaacgaataatctcaaca 380
Query: 180 caaacttacaagttaaagaggcttgaattcaaatcctgtggctgtctttgcattgacata 239
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacttacaaattaaacaggcttgaattcaaatcctgtggctgtctttgcattgacata 440
Query: 240 agcaattgcaggcatcctctccttggctgggttctggcacgccgggcactctgtggccat 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 agcaattgcaggcatcctctccttggctgggttctggcacgcagggcactctgtggccat 500
Query: 300 aattttgctaaataattaaacttccaacagtatggttcaaatatcagccatcacatatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattttgctaaataattaaacttccaacagtatggttcaaatatcagccatcacatatat 560
Query: 360 taactgtgaataattccataaagcacaacttttatagccagatctgtagtccacaaatca 419
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 561 taactgtgaataattccataaagtacaacttttacagccagatctgtagtccacaaatca 620
Query: 420 acagccaagtaacagata----ttatgatcagtgaccaagccaatctatcatgactttca 475
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagccaagtaacagatagacattatgatcagtgaccaagccaatctatcatgactttca 680
Query: 476 aagactactgtggttggtcatcatatgtgttgctcagttcaggcagagatagtgaagggt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagactactgtggttggtcatcatatgtgttgctcagttcaggcagagatagtgaagggt 740
Query: 536 aatattgtgttgtcttctcatttcctgataataactctgaaagacatcttccaaactaga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatattgtgttgtcttctcatttcctgataataactctgaaagacatcttccaaactaga 800
Query: 596 taattcagagagtgagttaaccatgaaaaaagtgagaccaa 636
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taattcagagagtgagttaaccatgaaaaaagtgagaccaa 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
