Query= MSMg01no520_e13.b1 MSMg01no520_e13.b1 CHROMAT_FILE:
MSMg01no520_e13.b1 PHD_FILE: MSMg01no520_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:17 2005
(495 letters)
>mm_chr9_88090931_88091824
Length = 894
Score = 837 bits (433), Expect = 0.0
Identities = 472/499 (94%), Gaps = 24/499 (4%)
Strand = Plus / Minus
Query: 19 ataaaacccacctcagagacattcttcataaagtcagacaagggcttgacagtctctgaa 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ataaaacccacctcagagacattcttcataaagtcagacaagggcttgacagtctctgaa 551
Query: 79 tgctcacacaattgctgcagctgtgcagtccttaaaaaagtaacacccccacccacccaa 138
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 550 tgctcacacaattgctgcagctgtgcagtccttaaaaaagtaaca-ccccacccacccaa 492
Query: 139 ctagacaatggttctgaatttttcttgtggtcccgcactccatgtctcttctggcagctc 198
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 491 ctagacaatggttctgaattcttcttgtggtcctgcactccatgtctcttctggcagctc 432
Query: 199 aatcggaggagattgtttctcactgtggttaatgtatcagttattgttaagcatcaccag 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatcggaggagattgtttctcactgtggttaatgtatcagttattgttaagcatcaccag 372
Query: 259 tcaaacatctccaaaactgcccacaatgtcttttacctttttggtagtagtgtggtcagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcaaacatctccaaaactgcccacaatgtcttttacctttttggtagtagtgtggtcagt 312
Query: 319 tttatcccaactgattttatctagcaaatgggctcccactaaatatgttcaggtggcata 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttatcccaactgattttatctagcaaatgggctcccactaaatatgttcaggtggcata 252
Query: 379 agttcctggagtattttggactatacatatata----------------------gccaa 416
||||||||||||||||||||||||| ||||||| |||||
Sbjct: 251 agttcctggagtattttggactatatatatatatatatatatatatatatatatagccaa 192
Query: 417 gacacatgacaatctgtagaatagatactaagttgcttccttggaaaaatcttcatcttg 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 191 gacacatgacaatctgtagaatagatactaagttgcttccttggaaaa-tcttcatcttg 133
Query: 477 tagtagctttattcatagc 495
|||||||||||||||||||
Sbjct: 132 tagtagctttattcatagc 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_e13.g1 MSMg01no520_e13.g1 CHROMAT_FILE:
MSMg01no520_e13.g1 PHD_FILE: MSMg01no520_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:17 2005
(545 letters)
>mm_chr9_87930443_87931387
Length = 945
Score = 1023 bits (529), Expect = 0.0
Identities = 541/545 (99%)
Strand = Plus / Plus
Query: 1 atgccacacaatcacagaaactatctgccactggcaaaaccacgctcctgctagagcatg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atgccacacaatcacagaaactatctgccactggcaaaaccatgctcctgctagagcatg 260
Query: 61 aggcaagtcatagtcagctgctgtggacactctgaaactgcatcatatccctgggattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaagtcatagtcagctgctgtggacactctgaaactgcatcatatccctgggattaa 320
Query: 121 aattaaaacatattcttataacatttctgtgttttttaaaccaaaattccaaaattgcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaaacatattcttataacatttctgtgttttttaaaccaaaattccaaaattgcta 380
Query: 181 ctacaggaagaagaaatactaattaagaaatacttgtggataccatgagagcttccctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacaggaagaagaaatactaattaagaaatacttgtggataccatgagagcttccctgt 440
Query: 241 cttctctagtaccaagagccaagtgactgttcttccttaccatgacctctatcatccagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctctagtaccaagagccaagtgactgttcttccttaccatgacctctatcatccagg 500
Query: 301 gaaggtaaaacagacctcttagctgagaaacaaccacagaaagaggcctagtgagactaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggtaaaacagacctcttagctgagaaacaaccacagaaagaggcctagtgagactaa 560
Query: 361 cagtgtcagatcactcatgtccttagctcacggttggcttcagctccatataagaactta 420
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 561 cagtgtcagatcactcatgtcctcagctcacagttggcttcagctccatataagaactta 620
Query: 421 aacattacttctgtcatgctccaccctcagacatgggcagaaaaataggtgtcttcattt 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 aacattacttctgtcatgctccaccctcagacatgggcagaaaaacaggtgtcttcattt 680
Query: 481 gtcagtgtttctgaggcaaggaaaacatttgagacgagatagaaaactgaacacatagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagtgtttctgaggcaaggaaaacatttgagacgagatagaaaactgaacacatagct 740
Query: 541 taatg 545
|||||
Sbjct: 741 taatg 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
