BAC Information

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BAC

Clone NameMSMg01-520E13
Chromosome9 (Build37)
Map Location 87,930,643 - 88,091,540
singlet/doubletdoublet
Overlap geneLOC100039580, LOC384962
Upstream geneCyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
Downstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520E13.T7 (MSMg01no520_e13.b1)MSMg01-520E13.TJ (MSMg01no520_e13.g1)
ACCAG591352AG591353
length760762
length of high quality
(start - end)
495 (53 - 547)545 (80 - 624)
definitionCHROMAT_FILE: MSMg01no520_e13.b1 PHD_FILE: MSMg01no520_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:17 2005CHROMAT_FILE: MSMg01no520_e13.g1 PHD_FILE: MSMg01no520_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,091,044 - 88,091,540)(87,930,643 - 87,931,187)
sequence
AACATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCTCCAGCTGTTTCCCATAAAACCCACCTCAGAGACATTCTTCATA
AAGTCAGACAAGGGCTTGACAGTCTCTGAATGCTCACACAATTGCTGCAG
CTGTGCAGTCCTTAAAAAAGTAACACCCCCACCCACCCAACTAGACAATG
GTTCTGAATTTTTCTTGTGGTCCCGCACTCCATGTCTCTTCTGGCAGCTC
AATCGGAGGAGATTGTTTCTCACTGTGGTTAATGTATCAGTTATTGTTAA
GCATCACCAGTCAAACATCTCCAAAACTGCCCACAATGTCTTTTACCTTT
TTGGTAGTAGTGTGGTCAGTTTTATCCCAACTGATTTTATCTAGCAAATG
GGCTCCCACTAAATATGTTCAGGTGGCATAAGTTCCTGGAGTATTTTGGA
CTATACATATATAGCCAAGACACATGACAATCTGTAGAATAGATACTAAG
TTGCTTCCTTGGAAAAATCTTCATCTTGTAGTAGCTTTATTCATAGCAGA
CAATAGGTCAGAGTAACACAAATGCTCATCAATAGATAAGTGGCTGAATA
CTGGAGAGTGTACTTACAATGGTTTATTCTACATGGCTATAGATGCCTGA
AGTATTGATACAAGTACCATTTCAATGAAATTTCCAGCCAATGGTGCTAA
AGTATGAAAACATTATGTGAAGGTAATTGAGGCTCAACGAGTTTCCCTTA
AAAATGATTG
ACGATATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGCCACACAATCACAGAAAC
TATCTGCCACTGGCAAAACCACGCTCCTGCTAGAGCATGAGGCAAGTCAT
AGTCAGCTGCTGTGGACACTCTGAAACTGCATCATATCCCTGGGATTAAA
ATTAAAACATATTCTTATAACATTTCTGTGTTTTTTAAACCAAAATTCCA
AAATTGCTACTACAGGAAGAAGAAATACTAATTAAGAAATACTTGTGGAT
ACCATGAGAGCTTCCCTGTCTTCTCTAGTACCAAGAGCCAAGTGACTGTT
CTTCCTTACCATGACCTCTATCATCCAGGGAAGGTAAAACAGACCTCTTA
GCTGAGAAACAACCACAGAAAGAGGCCTAGTGAGACTAACAGTGTCAGAT
CACTCATGTCCTTAGCTCACGGTTGGCTTCAGCTCCATATAAGAACTTAA
ACATTACTTCTGTCATGCTCCACCCTCAGACATGGGCAGAAAAATAGGTG
TCTTCATTTGTCAGTGTTTCTGAGGCAAGGAAAACATTTGAGACGAGATA
GAAAACTGAACACATAGCTTAATGCTTATCAATCATGTGCAAGGCCCTGG
GTTTGATCCTCAGCACAATTGAAGGAAGGGAGGGAAGGGAGTGGAGGTAG
GTATAAATATCTTTAATTCACGTCTTCATCTATCCTATCGTGTTTTTCTT
TTATATTAGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_e13.b1 MSMg01no520_e13.b1 CHROMAT_FILE:
MSMg01no520_e13.b1 PHD_FILE: MSMg01no520_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:17 2005
         (495 letters)



>mm_chr9_88090931_88091824
          Length = 894

 Score =  837 bits (433), Expect = 0.0
 Identities = 472/499 (94%), Gaps = 24/499 (4%)
 Strand = Plus / Minus

                                                                       
Query: 19  ataaaacccacctcagagacattcttcataaagtcagacaagggcttgacagtctctgaa 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ataaaacccacctcagagacattcttcataaagtcagacaagggcttgacagtctctgaa 551

                                                                       
Query: 79  tgctcacacaattgctgcagctgtgcagtccttaaaaaagtaacacccccacccacccaa 138
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 550 tgctcacacaattgctgcagctgtgcagtccttaaaaaagtaaca-ccccacccacccaa 492

                                                                       
Query: 139 ctagacaatggttctgaatttttcttgtggtcccgcactccatgtctcttctggcagctc 198
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 491 ctagacaatggttctgaattcttcttgtggtcctgcactccatgtctcttctggcagctc 432

                                                                       
Query: 199 aatcggaggagattgtttctcactgtggttaatgtatcagttattgttaagcatcaccag 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatcggaggagattgtttctcactgtggttaatgtatcagttattgttaagcatcaccag 372

                                                                       
Query: 259 tcaaacatctccaaaactgcccacaatgtcttttacctttttggtagtagtgtggtcagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcaaacatctccaaaactgcccacaatgtcttttacctttttggtagtagtgtggtcagt 312

                                                                       
Query: 319 tttatcccaactgattttatctagcaaatgggctcccactaaatatgttcaggtggcata 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttatcccaactgattttatctagcaaatgggctcccactaaatatgttcaggtggcata 252

                                                                       
Query: 379 agttcctggagtattttggactatacatatata----------------------gccaa 416
           ||||||||||||||||||||||||| |||||||                      |||||
Sbjct: 251 agttcctggagtattttggactatatatatatatatatatatatatatatatatagccaa 192

                                                                       
Query: 417 gacacatgacaatctgtagaatagatactaagttgcttccttggaaaaatcttcatcttg 476
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 191 gacacatgacaatctgtagaatagatactaagttgcttccttggaaaa-tcttcatcttg 133

                              
Query: 477 tagtagctttattcatagc 495
           |||||||||||||||||||
Sbjct: 132 tagtagctttattcatagc 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space:   428740
Effective search space used:   428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no520_e13.g1 MSMg01no520_e13.g1 CHROMAT_FILE:
MSMg01no520_e13.g1 PHD_FILE: MSMg01no520_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:17 2005
         (545 letters)



>mm_chr9_87930443_87931387
          Length = 945

 Score = 1023 bits (529), Expect = 0.0
 Identities = 541/545 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccacacaatcacagaaactatctgccactggcaaaaccacgctcctgctagagcatg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atgccacacaatcacagaaactatctgccactggcaaaaccatgctcctgctagagcatg 260

                                                                       
Query: 61  aggcaagtcatagtcagctgctgtggacactctgaaactgcatcatatccctgggattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaagtcatagtcagctgctgtggacactctgaaactgcatcatatccctgggattaa 320

                                                                       
Query: 121 aattaaaacatattcttataacatttctgtgttttttaaaccaaaattccaaaattgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaaacatattcttataacatttctgtgttttttaaaccaaaattccaaaattgcta 380

                                                                       
Query: 181 ctacaggaagaagaaatactaattaagaaatacttgtggataccatgagagcttccctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacaggaagaagaaatactaattaagaaatacttgtggataccatgagagcttccctgt 440

                                                                       
Query: 241 cttctctagtaccaagagccaagtgactgttcttccttaccatgacctctatcatccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctctagtaccaagagccaagtgactgttcttccttaccatgacctctatcatccagg 500

                                                                       
Query: 301 gaaggtaaaacagacctcttagctgagaaacaaccacagaaagaggcctagtgagactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggtaaaacagacctcttagctgagaaacaaccacagaaagaggcctagtgagactaa 560

                                                                       
Query: 361 cagtgtcagatcactcatgtccttagctcacggttggcttcagctccatataagaactta 420
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 561 cagtgtcagatcactcatgtcctcagctcacagttggcttcagctccatataagaactta 620

                                                                       
Query: 421 aacattacttctgtcatgctccaccctcagacatgggcagaaaaataggtgtcttcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 aacattacttctgtcatgctccaccctcagacatgggcagaaaaacaggtgtcttcattt 680

                                                                       
Query: 481 gtcagtgtttctgaggcaaggaaaacatttgagacgagatagaaaactgaacacatagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagtgtttctgaggcaaggaaaacatttgagacgagatagaaaactgaacacatagct 740

                
Query: 541 taatg 545
           |||||
Sbjct: 741 taatg 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)