Query= MSMg01no520_f19.b1 MSMg01no520_f19.b1 CHROMAT_FILE:
MSMg01no520_f19.b1 PHD_FILE: MSMg01no520_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:23 2005
(671 letters)
>mm_chr9_24591962_24593035
Length = 1074
Score = 1162 bits (601), Expect = 0.0
Identities = 644/671 (95%), Gaps = 21/671 (3%)
Strand = Plus / Plus
Query: 4 ggaattcacatcagctgaactttctaaggtagagggacagtgaagaa---caagttaatg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattcacatcagctgaactttctaaggtagagggacagtgaagaagaacaagttaatg 263
Query: 61 ggaagagggcatttcaaacccataacgagtgtccagcagtgacaaccactcacggagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaagagggcatttcaaacccataacgagtgtccagcagtgacaaccactcacggagtca 323
Query: 121 ttagatttggagattaaggaggcaattcgtgattttccagagaacatttgattagagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagatttggagattaaggaggcaattcgtgattttccagagaacatttgattagagtct 383
Query: 181 ctgggactgacaccagattgcaggagaacacatgaggccccgaggctgacagtctaatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ctgggactgacaccagattgcaggagaacacatgaggccccgaggctgacaatctaatgg 443
Query: 241 gagtggcttgtgtgaggcttatctctgagaagttccatgccaagcactggtcaccctcaa 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 gagtggcttgtgtgaggcttatctctgagaagttccatcccaagcactggtcaccctcaa 503
Query: 301 aggccaaaggaagggattagggttgaaatgcagaaagccatgcagacccctcagagtcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggccaaaggaagggattagggttgaaatgcagaaagccatgcagacccctcagagtcat 563
Query: 361 tcaaatgttcctttgagagctcctgctgccccacaacttgatgacagtctgtcagcacct 420
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 tcaaatgtttctttgagagctcctgctgccccacaacttgatgacagtctatcagcacct 623
Query: 421 taggtatcaacctctgtggcaggttcaggctgcccacctttcactaaatagcaggcagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taggtatcaacctctgtggcaggttcaggctgcccacctttcactaaatagcaggcagta 683
Query: 481 ccatagacaaagcttcctgatgcacaactctagtatgttgtagcataattaggtttcatt 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatagacaaagcctcctgatgcacaactctagtatgttgtagcataattaggtttcatt 743
Query: 541 ctctctctctctctctctctctctctctctctctctctctctntntctcaaacacacaca 600
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 744 ctctctctctctctctctctctctctctctctc------------------acacacaca 785
Query: 601 cacacacacacacacacacacatacacacacacacacatcacaaatgaagtgagtgaaga 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 786 cacacacacacacacacacacacacacacacacacacatcacaaatgaagtgagtgaaga 845
Query: 661 tctgaagttgt 671
|||||||||||
Sbjct: 846 tctgaagttgt 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space: 703304
Effective search space used: 703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_f19.g1 MSMg01no520_f19.g1 CHROMAT_FILE:
MSMg01no520_f19.g1 PHD_FILE: MSMg01no520_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:23 2005
(614 letters)
>mm_chr9_24646491_24647504
Length = 1014
Score = 1187 bits (614), Expect = 0.0
Identities = 614/614 (100%)
Strand = Plus / Minus
Query: 1 atgaggaagaagagttgataactctgaactgatttaagaatgagtattctgtcagcgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atgaggaagaagagttgataactctgaactgatttaagaatgagtattctgtcagcgtta 688
Query: 61 taataaagttaactatgagttgataatagaagactttggagatcttcagctgtgaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 taataaagttaactatgagttgataatagaagactttggagatcttcagctgtgaataat 628
Query: 121 ctgaggtgagatgctagttttggcaacaggtgctgttattctaccctgataaatgtttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgaggtgagatgctagttttggcaacaggtgctgttattctaccctgataaatgtttgt 568
Query: 181 cacagatttcaagcatcccttaccatctttctgggatgactgtgaatcatgaacatttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacagatttcaagcatcccttaccatctttctgggatgactgtgaatcatgaacatttaa 508
Query: 241 ttttggtgaatttcttgataagaccatgaaggaggaggtgggcgtggctagagaaagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttttggtgaatttcttgataagaccatgaaggaggaggtgggcgtggctagagaaagcag 448
Query: 301 tggtttatctgcatttggaataaatgctttttgtttttttttaaatgaaatcctaacacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tggtttatctgcatttggaataaatgctttttgtttttttttaaatgaaatcctaacacc 388
Query: 361 agaggtgaaggtttggttcaaaaaaattaggttgtcttatagatctgcatttaatatttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agaggtgaaggtttggttcaaaaaaattaggttgtcttatagatctgcatttaatatttc 328
Query: 421 ctaagttccaaataaattaaagaagcccacaaaagaggaaacggaaagtaaaatcatggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctaagttccaaataaattaaagaagcccacaaaagaggaaacggaaagtaaaatcatggc 268
Query: 481 ggcatactttctccctccacagactcagaaagttcagccagaaccactcagaaaattagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggcatactttctccctccacagactcagaaagttcagccagaaccactcagaaaattagg 208
Query: 541 tgtctgcagcagtgtagtggtggtttacacctttcatcacagcatcaggaaggcaggcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgtctgcagcagtgtagtggtggtttacacctttcatcacagcatcaggaaggcaggcac 148
Query: 601 agccagatctctga 614
||||||||||||||
Sbjct: 147 agccagatctctga 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
