Query= MSMg01no520_i08.b1 MSMg01no520_i08.b1 CHROMAT_FILE:
MSMg01no520_i08.b1 PHD_FILE: MSMg01no520_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:35 2005
(722 letters)
>mm_chr9_13802653_13803774
Length = 1122
Score = 1294 bits (669), Expect = 0.0
Identities = 708/721 (98%), Gaps = 3/721 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcatacaacctgtggtggaatcattttcactgaccttagggctgggctg-ttt 62
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 204 ggaattctcatacaacccgtggcggaatcattttcactgaccttagggctgggctggttt 263
Query: 63 agaccttgtggatcagagtcccccacacctgatgctaaagaactctctgtacagatgacc 122
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 264 ag-ccttgtggatcagagtcccccacacctgatgctaaagtactctctgtacagatgatc 322
Query: 123 atgacatacacgttaggtttcacagtctttcgaaggcttcatcactgctagttgtggcta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgacatacacgttaggtttcacagtctttcgaaggcttcatcactgctagttgtggcta 382
Query: 183 tatttaaaacgtgtggggtggcttttcaatcaatcttaaacatcagaaacagttgaattg 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatttaaaaagtgtggggtggcttttcaatcaatcttaaacatcagaaacagttgaattg 442
Query: 243 aggagttatgatttgtaactgtaaatttcacagctaacactcagtttgatatagtctttc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggagttatgatttgtaactgtaaatttcacagctaacactcagtttgatatagtctttc 502
Query: 303 ctaatcttcagagttgattgttttaagttccctgtcccttgtagtaatccaatccccgca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 ctaatcttcagagttgattgttttaagttccctgtcccttgtagtaatccaatccccaca 562
Query: 363 tagctacatctactaaaaggagactccaaaccttatctggtacgaattctaaattcttag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagctacatctactaaaaggagactccaaaccttatctggtacgaattctaaattcttag 622
Query: 423 agtgagtcaaattcaaacacaactccacgtgacacggaggaagatcccctacggctttct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 agtgagtcaaattcaaacacaactccacgtgacacggaggaagatcccctacgtctttct 682
Query: 483 gggtaagaaagagtagacgatggagggagggaggtgccaacagtaagccatgtatgtgcc 542
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gggtaagaaagagtagatgagggagggagggaggtgccaacagtaagccatgtatgtgcc 742
Query: 543 ctgctgtcacagtgagattttatgcatcccctaggttcctttcagacctaagacaaactc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgctgtcacagtgagattttatgcatcccctaggttcctttcagacctaagacaaactc 802
Query: 603 atttataaaacagaagttgggtacaactgactcaaggctggcctagaactctcgagatag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atttataaaacagaagttgggtacaactgactcaaggctggcctagaactctcgagatag 862
Query: 663 ctgaggataaccttgaacgtcttctttccctgcctcaggcttgggaat-acaaacacgcc 721
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 863 ctgaggataaccttgaatgtcttctttccctgcctcaggcttgggaattacaaacacgcc 922
Query: 722 a 722
|
Sbjct: 923 a 923
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space: 791744
Effective search space used: 791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_i08.g1 MSMg01no520_i08.g1 CHROMAT_FILE:
MSMg01no520_i08.g1 PHD_FILE: MSMg01no520_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:35 2005
(585 letters)
>mm_chr9_13858248_13859232
Length = 985
Score = 1094 bits (566), Expect = 0.0
Identities = 581/586 (99%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 1 aaggccaacgtgggctatgtgagactgttaaaaaacaaaaaaa-caaaaaaacaaaaaca 59
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 854 aaggccaacgtgggctatgtgagactgttaaaaaacaaaaaaaccaaaaaaaaaaaaaca 795
Query: 60 aaacaaaaaactgtaccatgtatctttctcattactccaatgaagtgtctgaaggcctgc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaacaaaaaactgtaccatgtatctttctcattactccaatgaagtgtctgaaggcctgc 735
Query: 120 atggaatgaatgctgcctcgagttctgctggttgttgatgaaaaaaggaaggatgcttta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atggaatgaatgctgcctcgagttctgctggttgttgatgaaaaaaggaaggatgcttta 675
Query: 180 ggttacgtttaaatcaaaaatcagtgaggtttgctcacaggatgaggaaatagcattcgc 239
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 674 ggttacgtttaaatcaaaaatcagtgaggtttgctcgcaggatgaagaaatagcattcgc 615
Query: 240 tcatcagctgtgaatttcccaagccctggcactttcagtaactcatatgagcagggtctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcatcagctgtgaatttcccaagccctggcactttcagtaactcatatgagcagggtctt 555
Query: 300 tctgagaaggctcccagcctggctagatgcaggcactgtcttgcaacctctcaggctcac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctgagaaggctcccagcctggctagatgcaggcactgtcttgcaacctctcaggctcac 495
Query: 360 tctgtgattgagatcccacctgtaaaagcagggtaggctgaggtcctttctggagtatgc 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 494 tctgtgattgagatcccacctgtaaacgcagggtaggctgaggtcctttctggagtatgc 435
Query: 420 tgtggactgccaggttcgtattagcactgacagagcttgtgttagctgctttctgattca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtggactgccaggttcgtattagcactgacagagcttgtgttagctgctttctgattca 375
Query: 480 tggagcgacagttgtatgtgacagatttaaggagccatagaaacagcacattatttaaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tggagcgacagttgtatgtgacagatttaaggagccatagaaacagcacattatttaaaa 315
Query: 540 gacaatgaggtcaatggttctatagtaatcagtgagtgtgccccag 585
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gacaatgaggtcaatggttctatagtaatcagtgagtgtgccccag 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
