BAC Information

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BAC

Clone NameMSMg01-520J04
Chromosome9 (Build37)
Map Location 78,599,214 - 78,599,888
singlet/doubletsinglet
Overlap genenone
Upstream geneGclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109
Downstream geneLOC384957, EG666456, LOC436085, LOC235509, LOC666479, Col12a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520J04.T7 (MSMg01no520_j04.b1)MSMg01-520J04.TJ (MSMg01no520_j04.g1)
ACCAG591573AG591574
length732732
length of high quality
(start - end)		679 (52 - 730)648 (85 - 732)
definitionCHROMAT_FILE: MSMg01no520_j04.b1 PHD_FILE: MSMg01no520_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:39 2005CHROMAT_FILE: MSMg01no520_j04.g1 PHD_FILE: MSMg01no520_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGAATATGAAATATGTATTAAGTTGAATTAGCTCCTTCC
TCACACTTCCTCACCCTGTCTCAAGATAAGTTAAAGTTGGGTGGTTTTAT
TCTTAGAATAACAAAACTAAATTTATAATTAAATCCATTTACTTACTTAT
GTATGTATGTATGTATGTATGTATTTATTTATTATTCATCTATTTATTCA
TTATTAAATCTATTGCTCAATAGATAAAAGGTTTTCTGTTCCCACATCAA
AACTACCATGGCTATCTTAGCCCTCTATTTGGCTGCTGAGCACTTTCCTT
AGTCAGTTCTTTGTCTTGTAGTCTTTCAGCGGAAGAACCTCAAGTGGTGA
CACTAAATCCAAGCTAGGCTTTCACAGTAGAACCCAAGCTAGACACAAAA
TGAGTCTTCATTGTGACTTCCACTCCTTGGTATGATTATTTACAAGTAAC
TGCAAAATGAGATAGTCCAGTAACAGAGTAGAATTTAAAATATGGGAGTA
ACATGAGAAGGAGGAGCCTGTCCCCTCCTGAGCTTCACATTGAATTTACC
TGGAACTCATATGTTTCCTAATGTTAGAATGTCAATTGTGTAATCTTTGC
TGTTTGTTTATATTTTAATATACATGGTGTTACATATTGGATTATTTTAC
ATCTTCAAATGTTTATAAAGCACTCATTTAAN

TTTATTTTCCTATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTTCTGCTTCTA
TTTAAAGGAAAATTTTCTTAGCATCTCTGATGGTTGAGCCCCTCACATTG
AGCGCTGATTGTGGGGTTCTCTGCCAACAACACAGCCCGCAGAGTGTTGA
TACAAGTGAGGCAAGAAGGAAATCTGGCTTAATGCACGCAGTTCAGCAGC
TGGTGTTGGTTCAAACCCCGCCCGGAAGGACCGTTTGCTTTAGGCACATT
TAAGTACAGTACAATTTTGGAAAAAGGTTTCCTGGCGACAATTAACTCAA
TCCCGTGTGCATGACGAAGCTTATGGCATTACAAAGTACATGTGATCTCT
TCCATAAAGATGAATTCTTATCGATTGAGAAACAATGTCCGAGATAAAGC
TCTGGAGAGGAAGAGTCTGGGATGTAGACAAAAGTCTGGGGGAGTCAGGT
GTGGCCTGGCCCTACAGATAGCACAGGTCACTAGACTATTAATCACACCC
ACTCTCAACCTTCTGGGTGGAAAACAGGTTATACATATCTTCTGTTGACA
AGACAACCCTGCGTGTTTAACATTGCAGGCTTCCCTGAGACTATCCATAT
CAGCTGAGCTGTGGGGATTAAAGACCACAGGGACTCACAGTAGTCCCCAT
CTCCATACCTGAGAAAGCACTTTCTGTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_j04.b1 MSMg01no520_j04.b1 CHROMAT_FILE:
MSMg01no520_j04.b1 PHD_FILE: MSMg01no520_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:39 2005
         (679 letters)



>mm_chr9_78598813_78599891
          Length = 1079

 Score = 1274 bits (659), Expect = 0.0
 Identities = 671/675 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctgaatatgaaatatgtattaagttgaattagctccttcctcacacttcctcacc 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 gaattctgaatatgaaatatgtattaagttgaattagctccttcctcacacttcctcacc 1017

                                                                        
Query: 65   ctgtctcaagataagttaaagttgggtggttttattcttagaataacaaaactaaattta 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ctgtctcaagataagttaaagttgggtggttttattcttagaataacaaaactaaattta 957

                                                                        
Query: 125  taattaaatccatttacttacttatgtatgtatgtatgtatgtatgtatttatttattat 184
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 956  taattaaatccatttacttacttatgtatgtatgtatgtatttatttatttatttattat 897

                                                                        
Query: 185  tcatctatttattcattattaaatctattgctcaatagataaaaggttttctgttcccac 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  tcatctatttattcattattaaatctattgctcaatagataaaaggttttctgttcccac 837

                                                                        
Query: 245  atcaaaactaccatggctatcttagccctctatttggctgctgagcactttccttagtca 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  atcaaaactaccatggctatcttagccctctatttggctgctgagcactttccttagtca 777

                                                                        
Query: 305  gttctttgtcttgtagtctttcagcggaagaacctcaagtggtgacactaaatccaagct 364
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 776  gttctttgtcttgtagtctttcagtggaagaacctcaagtggtgacactaaatccaagct 717

                                                                        
Query: 365  aggctttcacagtagaacccaagctagacacaaaatgagtcttcattgtgacttccactc 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  aggctttcacagtagaacccaagctagacacaaaatgagtcttcattgtgacttccactc 657

                                                                        
Query: 425  cttggtatgattatttacaagtaactgcaaaatgagatagtccagtaacagagtagaatt 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  cttggtatgattatttacaagtaactgcaaaatgagatagtccagtaacagagtagaatt 597

                                                                        
Query: 485  taaaatatgggagtaacatgagaaggaggagcctgtcccctcctgagcttcacattgaat 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  taaaatatgggagtaacatgagaaggaggagcctgtcccctcctgagcttcacattgaat 537

                                                                        
Query: 545  ttacctggaactcatatgtttcctaatgttagaatgtcaattgtgtaatctttgctgttt 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  ttacctggaactcatatgtttcctaatgttagaatgtcaattgtgtaatctttgctgttt 477

                                                                        
Query: 605  gtttatattttaatatacatggtgttacatattggattattttacatcttcaaatgttta 664
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 476  gtttatattttaatatacatggtgttacatattggattattttacgtcttcaaatgttta 417

                           
Query: 665  taaagcactcattta 679
            |||||||||||||||
Sbjct: 416  taaagcactcattta 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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