Query= MSMg01no520_n24.b1 MSMg01no520_n24.b1 CHROMAT_FILE:
MSMg01no520_n24.b1 PHD_FILE: MSMg01no520_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:02 2005
(528 letters)
>mm_chr9_80194944_80195871
Length = 928
Score = 876 bits (453), Expect = 0.0
Identities = 471/477 (98%)
Strand = Plus / Minus
Query: 52 ttctcctgggttgctcatggatgccttctagagtctctcatatctgttcagatgagggca 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 ttctcctgggttgctcatggatgccttctagagtctctcatatctgttcagatgagggca 869
Query: 112 ctaataccagtatcatccaacaagggctctcttctcacaacatgcctatctccctatggc 171
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 868 ctaataccagtaccatccaacaagggctctcctctcacaacatgcctatctccctatggc 809
Query: 172 ctcatctccaaatgttattattttgtgggataagagttgtccacatgaatttgggaggta 231
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 808 ctcatctccaaatgttattatattgtgggataagagttctccacatgaatttgggaggta 749
Query: 232 tagaagcattcagctcataggaaatgaagatttggataaaaatctcagcttatatgcaca 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tagaagcattcagctcataggaaatgaagatttggataaaaatctcagcttatatgcaca 689
Query: 292 gagagcatagatgtcagcaaatattatttctggcagttgactgaattatgattagacaca 351
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 688 gagagcatagatgtcagcaaatattatttctggcagttgaccgaattatgattagacaca 629
Query: 352 tctaggaactttgtgctggggtcgacaagggtccgcccctgaaatggaagcataactcaa 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cctaggaactttgtgctggggtcgacaagggtccgcccctgaaatggaagcataactcaa 569
Query: 412 ccaatagcaaggttttattttaagaaagtaatgaagctgatatgattctgcctctcagag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccaatagcaaggttttattttaagaaagtaatgaagctgatatgattctgcctctcagag 509
Query: 472 ctgtttagaacttggagtttcagttttggtgattgcactgtggtaaattatttgagt 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctgtttagaacttggagtttcagttttggtgattgcactgtggtaaattatttgagt 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_n24.g1 MSMg01no520_n24.g1 CHROMAT_FILE:
MSMg01no520_n24.g1 PHD_FILE: MSMg01no520_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:02 2005
(671 letters)
>mm_chr9_80008431_80009500
Length = 1070
Score = 1139 bits (589), Expect = 0.0
Identities = 659/705 (93%), Gaps = 36/705 (5%)
Strand = Plus / Plus
Query: 1 ctgggatagcctctgccatccatgctgggatatatcatggttggtagagggcctgccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ctgggatagcctctgccatccatgctgggatatatcatggttggtagagggcctgccaag 225
Query: 61 caggcaccaggctctggggt-----------------------------------tcgtc 85
|||||||||||||||||||| |||||
Sbjct: 226 caggcaccaggctctggggtttgtccccaggagaacaggcaccaggctctggggctcgtc 285
Query: 86 cccaggactgtgtaaaccacagtgtctgtgatcttaacagtctaggagataggggtagaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cccaggactgtgtaaaccacagtgtctgtgatcttaacagtctaggagataggggtagaa 345
Query: 146 ggagaaatctcagaagtctccagagtaatcacataacacaagtatgaagttgccaaagac 205
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggagaaatctcagaagtctccatagtaatcacataacacaagtatgaagttgccaaagac 405
Query: 206 ttaattacattttaaaaagaaagttaaagaacatcctcagctataatcacgtcccaggcc 265
||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 406 ttaattaaattttaaaaagaaagttaaagaacagcctcagctataagcacgtcccaggcc 465
Query: 266 tgcctgtgatatatgggaccctgttttagaaaagaggagggaatgcggagggtcaaatcg 325
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 466 tgcctgtgatatatgggaccctgttttagaaaagaggagggactgtggagggtcaaatcg 525
Query: 326 agctgtagacttagggcatgtaagtatggactggggttgggtcacagagacagagttact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agctgtagacttagggcatgtaagtatggactggggttgggtcacagagacagagttact 585
Query: 386 tccattatgcttgatgataacatatgcagtttccagaatcatcatctgtccgtctttcct 445
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 586 tccattatgcttgatgataacatatgcagtttccagaatcatcatctgtccatctttcct 645
Query: 446 ctttattcaataataacaccaatgctaggcactatttatttatttagcattaagtacgtt 505
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctttattca-taataacaccaatgctaggcactatttatttatttagcattaagtacgtt 704
Query: 506 accactgagctatatcttgggccgtgtaggcacttcttaacgaaaaagctactgtgctcc 565
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 705 accactgagctatatcttgggccctgtaggcacttcttaacgaaaaagctactgtgctcc 764
Query: 566 acacttgaaatccaaaggatagtctattgtgccctcaaagagtgtacaggctaactagag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acacttgaaatccaaaggatagtctattgtgccctcaaagagtgtacaggctaactagag 824
Query: 626 aatacacaaaaggacacataggtggccagagtacaatatgtatta 670
|||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 825 aatacacaaaagaacacataggtggccagagtacaatatgcatta 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
