Query= MSMg01no520_p03.b1 MSMg01no520_p03.b1 CHROMAT_FILE:
MSMg01no520_p03.b1 PHD_FILE: MSMg01no520_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:08 2005
(691 letters)
>mm_chr9_94361015_94362105
Length = 1091
Score = 1266 bits (655), Expect = 0.0
Identities = 679/687 (98%)
Strand = Plus / Minus
Query: 5 gaattctcttaaagggaaatgttaagagcagattggagagagctgtggtatgatccataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaattctcttaaagggaaatgttaagagcagattggagagagctgtggtatgatccataa 638
Query: 65 catgcatacttctgagaaagaagaaatggagatttgaaaagtggctttcaaaatatagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 catgcatacttctgagaaagaagaaatggagatttgaaaagtggctttcaaaatatagga 578
Query: 125 acatcaatccataggccatgttgtcttcacataaaatagtctatgagggcaaagcataag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acatcaatccataggccatgttgtcttcacataaaatagtctatgagggcaaagcataag 518
Query: 185 tgtgtgaaaaatgttaaagaaatcaaagtcaatggattaaaaatgtagaatgaaaagcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgtgtgaaaaatgttaaagaaatcaaagtcaatggattaaaaatgtagaatgaaaagcca 458
Query: 245 aatagaaatttcataaatgttttatttatgtttaaatagtgatagatttctatgaaaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatagaaatttcataaatgttttatttatgtttaaatagtgatagatttctatgaaaagc 398
Query: 305 acaaagagaatacagttttaagatgtcagtagctcattctcctattactaacatcttgca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 397 acaaagagaatacagttttaagatgtcagtagctcattctcctattactaacatcttaca 338
Query: 365 gaaccctggttgtgtatttttcacaattcagcaattagttctaatagaatatcaacaact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaaccctggttgtgtatttttcacaattcagcaattagttctaatagaatatcaacaact 278
Query: 425 aaatctgggctccaccccagtttccctagcttttagtgtagtgtctttcccctgtcttaa 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaatctgggctccaccccagttaccctagcttttagtgtagtgtctttcccctgtcttaa 218
Query: 485 tcactatagtacacacttctctcagatgcaaggggtttttatacttgactctgttttaca 544
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 217 acactatagtacatacttctctcagatgcaaggggtttttatacctgactctgttttaca 158
Query: 545 tgaccatgactggttgtatttcaggcatcttgtagattcctctcactgggagtcacctca 604
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 157 tgaccatgactggttgtatttcaggcatcttgtatattcctttcactgggagtcacctca 98
Query: 605 tgattttctcatgatcaaactggactctcaagtttggtagggaaacctcagggatccagt 664
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 97 tgattttctcatgatcaaactggactctcaagtttggtagggaaacctcaggaatccagt 38
Query: 665 gccatctcattaagtcctgactaggac 691
|||||||||||||||||||||||||||
Sbjct: 37 gccatctcattaagtcctgactaggac 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_p03.g1 MSMg01no520_p03.g1 CHROMAT_FILE:
MSMg01no520_p03.g1 PHD_FILE: MSMg01no520_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:08 2005
(696 letters)
>mm_chr9_94185182_94186276
Length = 1095
Score = 1290 bits (667), Expect = 0.0
Identities = 688/695 (98%), Gaps = 1/695 (0%)
Strand = Plus / Plus
Query: 1 cacacattgccacccatctctgagttcttcccttctccctgaccctgcgcaggcttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacattgccacccatctctgagttcttcccttctccctgaccctgcgcaggcttttgg 260
Query: 61 ttcaccttatactgcttcccatcctagtagatttttgactgctagcccacactggccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaccttatactgcttcccatcctagtagatttttgactgctagcccacactggccagc 320
Query: 121 tgtgcaatctactcaaagcacttcgaaaggaaaggaaacaaggaagaaagaagccccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgcaatctactcaaagcacttcgaaaggaaaggaaacaaggaagaaagaagccccatt 380
Query: 181 ctacaaagtctgcatggcattgaatatcaataagcatgattgaaatcccagagacatttc 240
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctacaaagtctgcatggcattgaacatcaataggcatgattgaaatcccagagacatttc 440
Query: 241 ttataagtatcagaactcatctattcacatcaagcaaaccctgggtatttattgaacacc 300
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacaagtatcagtactcatctattcacatcaagcaaaccctgggtatttattgaacacc 500
Query: 301 tatgtgttcagctgaggggatttgagaaaagtatgaaaagtttcctgtcatgtcgttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tatgtgttcagctgaggggatttgagaaaagtatgaaaagtttcctgtcatatcgttcct 560
Query: 361 tggaagatgtgaaattaaagaggaaataaaacagtaaaaggcattttatttcccatagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaagatgtgaaattaaagaggaaataaaacagtaaaaggcattttatttcccatagca 620
Query: 421 atagaaatacaaaaagaaaaaatatgtaactattaggttctcagatggacataataccaa 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagaaatacaaaaagaaaaa-tatgtaactattaggttctcagatggacataataccaa 679
Query: 481 gtttgctttgaggcaacctttttatgcctggtgtttatgccattccttctggttccatcg 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 680 gtttgctttgaggcaacctttttatgcctggtgtttatgcctttccttctggttccatcg 739
Query: 541 aagctcacttgctaccaagccttccgttaatgactcggcacaaggtgataagccccactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagctcacttgctaccaagccttccgttaatgactcggcacaaggtgataagccccactt 799
Query: 601 tgtatgattgttagagcatgtaccaccattattacattaatatccctgtcataagaatga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgtatgattgttagagcatgtaccaccattattacattaatatccctgtcataagaatga 859
Query: 661 aagcataataagttgtggcatattaatttttaaat 695
|||||||||||||||||||||||||||||||||||
Sbjct: 860 aagcataataagttgtggcatattaatttttaaat 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1095
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1085
Effective search space: 744310
Effective search space used: 744310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
