Query= MSMg01no521_a18.b1 MSMg01no521_a18.b1 CHROMAT_FILE:
MSMg01no521_a18.b1 PHD_FILE: MSMg01no521_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:16 2005
(598 letters)
>mm_chr9_72947649_72948646
Length = 998
Score = 1125 bits (582), Expect = 0.0
Identities = 594/598 (99%), Gaps = 2/598 (0%)
Strand = Plus / Plus
Query: 1 attctttttattgtccaagcaacagatactgatttgatttgggttgcctttgtgtgcacc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttttagtgtccaagcaacagatactgatttgatttgggttgcctttgtgtgcacc 260
Query: 61 ccaaaaataccaacagtgggactatgtttcaaaagagaacagaaaggaaaatcttttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaaaataccaacagtgggactatgtttcaaaagagaacagaaaggaaaatcttttgtt 320
Query: 121 cacaacggctagccaggcatggtgtacacgcatgtaaccccagcatctgggaagctgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaacggctagccaggcatggtgtacacgcatgtaaccccagcatctgggaagctgaca 380
Query: 181 cttgaggatcagaagtttggggggaacttgggctctatggtgaggcccaggctgcctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaggatcagaagtttggggggaacttgggctctatggtgaggcccaggctgcctggg 440
Query: 241 ctacagtgtgagactgtctcaaaagtaggcaaacaaccaaaaccaaaaatgaattctata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagtgtgagactgtctcaaaagtaggcaaacaaccaaaaccaaaaatgaattctata 500
Query: 301 gccaccttaataaaatcacaaggactttattgtattaagatgtgcactatttggctggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaccttaataaaatcacaaggactttattgtattaagatgtgcactatttggctggag 560
Query: 361 agatggctcagcggttaagagcactcactgattgctctcccagaagtcctgagttcaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatggctcagcggttaagagcactcactgattgctctcccagaagtcctgagttcaatt 620
Query: 421 cccagcaaccgttgacatggtggctcacaatcatctggagccctcttctggtgtgtctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccagcaaccgttgacatggtggctcacaatcatctggagccctcttctggtgtgtctga 680
Query: 481 agacagctacagtgcattcatagccataaaataaataaatctttaaaaaaaaaaagagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 681 agacagctacagtgcattcatagccataaaataaataaatctttaaaaaaaaaaa-a-ag 738
Query: 541 agatgtgcactattcactagtttgtgcgtgtatagattttgagtttaagctattgtaa 598
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 agatgtgcactattcactagtttgtgcgtgtatagattttgagttgaagctattgtaa 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_a18.g1 MSMg01no521_a18.g1 CHROMAT_FILE:
MSMg01no521_a18.g1 PHD_FILE: MSMg01no521_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:16 2005
(640 letters)
>mm_chr9_73166190_73167229
Length = 1040
Score = 953 bits (493), Expect = 0.0
Identities = 524/541 (96%), Gaps = 13/541 (2%)
Strand = Plus / Minus
Query: 104 tgtgcacatgtgtgtggatgtgccaactgcgtctagaagagggtgacagatcccctggag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 tgtgcacatgtgtgtggatgtgccaactgcgtctagaagagggtgacagatcccctggag 981
Query: 164 cccgagttccaggcagttgtaagcagcctgatctggctgcaaggaactgagatcttcagc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 cccgagttccaggcagttgtaagcagcctgatctggctgcaaggaactgagatcttcagc 921
Query: 224 tcttctggaagaaaaatacaaactcttatctgtcgggccgtctctctaaccccatgaatg 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tcttctggaagaaaaatacaaactcttatctgtcgggccgtctctctaacccc------- 868
Query: 284 gtgatattcttaaaaaaaaa----attaaaaaactgctttattgaaaacacagccatttt 339
||||| ||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 867 gtgatcttctttaaaaaaaatgttttt--aaaactgctttattgaaaacacagccatttt 810
Query: 340 ctagagtagagattttcttattgtaatataagccagtttcatctgaaaaatcttaatttt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctagagtagagattttcttattgtaatataagccagtttcatctgaaaaatcttaatttt 750
Query: 400 ttagttcacattcccaagtctttcttcatgctcctttgcttgatattcagaatgctaact 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttagttcacattcccaagtctttcttcatgctcctttgcttgatattcagaatgctaact 690
Query: 460 gataggttaaatcatggtcactacctaatgaagtatcttcaatccctgcctccctccata 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gataggttaaatcatggtcactacctaatgaagtatcttcaatccctgcctccctccata 630
Query: 520 ctcccagctagtcacccagcagtcctctacttttctaacgtgtagaatcttcaataaagg 579
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctcccggctagtcacccagcagtcctctacttttctaacgtgtagaatcttcaataaagg 570
Query: 580 aattagtctccctgtcaatcaacagtcctgcttttgacctgcccagttctcacacaatcc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aattagtctccctgtcaatcaacagtcctgcttttgacctgcccagttctcacacaatcc 510
Query: 640 c 640
|
Sbjct: 509 c 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
