BAC Information

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BAC

Clone NameMSMg01-521M20
Chromosome9 (Build37)
Map Location 19,640,854 - 19,641,516
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859
Downstream geneOlfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521M20.T7 (MSMg01no521_m20.b1)MSMg01-521M20.TJ (MSMg01no521_m20.g1)
ACCAG592512AG592513
length758750
length of high quality
(start - end)		625 (50 - 674)640 (81 - 720)
definitionCHROMAT_FILE: MSMg01no521_m20.b1 PHD_FILE: MSMg01no521_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:14 2005CHROMAT_FILE: MSMg01no521_m20.g1 PHD_FILE: MSMg01no521_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACACCATCCAGTGGAAAAAAAAAGCATTGTCAACAAATGGT
ACTGGTTCAAGTGGCAGTTGGTATGTGGAAAAATGCAAATTGATCCATTT
TTATCTCCTTGTAGAAAACTCAAGTCCAAGATTGATCAAGGACCTTCACA
AGGAAAAAAAAAAAGAGAGAAAAAAGAAAGAAAAACAGATACACTGAATC
TAATAAGAGAGAAAGTCGGAAAGAGCCTTGAACACATCAGAACAGGGCAA
GTTTTCCAGAACAGAGCAATAATGGTTTAGGTTCTAAGTTCAACATTTGA
CAAAAGGACCTCATAAAATTTAAAAGATTCTGTAAGCCAAAGGGTAAAAT
GGCGTCCTACAGAATGGGAGAGATATTTACCAATCATACATCCAATGGAG
GGCTAGTGTACAAAATGTACAAAGAACTCAAGAAGTTAGACTATAAAGAA
CTAAATAACCCTATTTAAAATAGGGTACTTGCTAAAGAATGAATTCTCAA
CTGAGGAATCTCAAATGTCTGAGAAGCATCTAAAGAAATGTTCAACATCC
TTGGTTATTAGAGAAATACAGATCAAAATGACTCTGAAATGTAGCCTCCC
CCCCCCCCACCTTGCTACCACTGAGGATGAGACCACCTGGGGTGGAGCCT
TCCCACCTAGATGGNTCTATTGTTCTGTTCTACTTCTAGACACTGCTACC
TGCTGAAN

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAATGTATACAATCTCA
GACAAGACAAAATCCATCATGGAATGGTGAGAGGTAGGAATGAAATCTCA
TCTCACCAATAGCAGCTGTTAGTATTCATTGCTGTGGAGAGGGAGTGTCA
AGGATCAAGTTCCATTTGTGTATTTTAATAGCACGAGTTGCTGACAATTT
AAGAATTAGGTGGCTGTATATACATGCATGAGTCCTCAATTTTATTACAT
TAAAAATGACTTTGATTTTTTTCATGAGTATCATCCTGTTTTTATTACTT
TAGACCTTTAATTTAAGTTGGAATCTAGGATAGTGATACTACCAGCAGTT
TTTTGTTTGTTTGTTTTTGTTTGATTTGTTTTTGGTTTTTTTAAGGGGTT
ATTTTTTTTTTTTTACTTTTTTAATTAGGTATTTTCTTCATTTACATTTC
CAATGCTATCCCAAAAGTCCCCCACACTCTCCCCCCTACTCCCCTACCCA
GGCACTCCCACTTCTTGGTCCTGGCGTTCCCCTGTACTGAGGCATATAAA
GTTTGGAAGACCAATGAGCCTCTCTTTCCAATGATGACAGACTAGGCCAT
CTTCTGATACATATGCAGCTAGAGACAGGAGCTCAGGCGGGTACTGGTTA
GTTGATTGCCATGGCACTCTGGTGGAGTCAGCTTGACAAAGCNGACGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_m20.g1 MSMg01no521_m20.g1 CHROMAT_FILE:
MSMg01no521_m20.g1 PHD_FILE: MSMg01no521_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:15 2005
         (640 letters)



>mm_chr9_19640654_19641693
          Length = 1040

 Score =  833 bits (431), Expect = 0.0
 Identities = 591/669 (88%), Gaps = 49/669 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaatgtatacaatctcagacaagacaaaatccatcatggaatggtgagaggtaggaa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaatgtatacaagctcagacaagacaaaatccatcatggaatggtgagaggtaggaa 260

                                                                       
Query: 61  tgaaatctcatctcaccaatagcagctgttagtattcattgctgtggagagggagtgtca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tgaaatctcatctcaccaatagcagctgttagcattcattgctgtggagagggagtgtca 320

                                                                       
Query: 121 aggatcaagttccatttgtgtattttaatagcacgagttgctgacaatttaagaattagg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 321 aggatcaagttccatttgtgtattttaatagcatgagttgctgacaattcaagaattagg 380

                                                                       
Query: 181 tggctgtatatacatgcatgagtcctcaattttattacattaaaaatgactttgattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 381 tggctgtatatacatgcatgagtcctcaattttattacattaaaaatgactttgactttc 440

                                                                       
Query: 241 ttcatgagtatcatcctgtttttattactttagacctttaatttaagttggaatctagga 300
           | |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 t-catgagtatcattctgtttttattaatttagacctttaatttaagttggaatctagga 499

                                                                       
Query: 301 tagtgatactaccagcagttttttgtttg-tttg-ttt---ttg-tttgatttgtttttg 354
           |||||||||||||||||||||||| |||| |||| |||   ||| ||||||||||||| |
Sbjct: 500 tagtgatactaccagcagttttttctttggtttggtttagtttgctttgatttgttttcg 559

                                                                       
Query: 355 gtttt-----------------------------------tttaaggggttatttttttt 379
           |||||                                   ||| ||| |||||| |||||
Sbjct: 560 gttttgttgttgttgttgctgttgttgttgttgttgttgtttttaggagttattcttttt 619

                                                                       
Query: 380 tttttacttttttaa-ttaggtattttcttcatttacatttccaatgctatcccaaaagt 438
           |||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 ttttcacttttttaaattacgtattttcttcatttacatttccgatgctatcccaaaagt 679

                                                                       
Query: 439 cccccacactctcccccctactcccctacccaggcactcccacttcttggtcctggcgtt 498
           |||| || | | |||||  | |||||||||||  ||||||||||||||  ||||||||||
Sbjct: 680 cccc-acccccaccccc--aatcccctacccacccactcccacttcttattcctggcgtt 736

                                                                       
Query: 499 cccctgtactgaggcatataaagtttggaagaccaatgagcctctctttcc-aatgatga 557
           ||||||||||||||||||||||||||| ||||||||| || |||| ||||| ||||||| 
Sbjct: 737 cccctgtactgaggcatataaagtttgcaagaccaataaggctct-tttcccaatgatgg 795

                                                                       
Query: 558 cagactaggccatcttctgatacatatgcagctagagacaggagctcaggcgggtactgg 617
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 796 cagactaggccatcttctgatacatatgcagctagagacaggagctcagg-gggtactgg 854

                    
Query: 618 ttagttgat 626
            ||||||||
Sbjct: 855 atagttgat 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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