Query= MSMg01no522_e23.b1 MSMg01no522_e23.b1 CHROMAT_FILE:
MSMg01no522_e23.b1 PHD_FILE: MSMg01no522_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
(552 letters)
>mm_chr9_55275843_55276794
Length = 952
Score = 990 bits (512), Expect = 0.0
Identities = 530/536 (98%)
Strand = Plus / Minus
Query: 16 gtaccacacagatttcattccgttacttttgtctctgtccctccctctcttcttccttag 75
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gtaccacacagatctcattccgttacttttgtctctgtccctccctctcttcttccttag 893
Query: 76 acagggccttgtgtagtctcagacagctccaacctcaccttcaacttgtgatacttggcc 135
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 892 acagggccttgtgtagtctcaggcagctccaacctcaccttcaacttgtgatacttggcc 833
Query: 136 acactcctgagtgctgggatgctgttctgcctggctccatgcagctctgagactgcaact 195
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 832 acactcctgagtgctgggatgctgctctgcctggctccatgcagctctgagactgcaact 773
Query: 196 caaagcttcctgcactaggcagcccgactgggccacacccccggggcctattttcattct 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 caaagcttcctgcactaggcagcccgactgggccacacccccggggcctattttcattct 713
Query: 256 cagtccatccatttctatgaaagcagaacaggtttacaacggaaagcatttagtcactca 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cagtccatccatttctatgaaagcagaacaggtttacaacggaaagcatttagtcactca 653
Query: 316 cgttggtgtggcctagcggtgaccagcattggtggcctagcgttgggcatctcccagggt 375
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cgttggcgtggcctagcggtgaccagcattggtggcctagcgttgggcatctcccagggt 593
Query: 376 cactatctgcatgtttcattgacctctgtcagggacgaacctctgggtgtgtgctgctgc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cactatctgcatgtttcattgacctctgtcagggacgaacctctgggtgtgtgctgctgc 533
Query: 436 actgggagcagggcaggggaacagcatatgactggggagggggaccgtctataactctta 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actgggagcagggcaggggaacagcatatgactggggagggggaccgtctataactctta 473
Query: 496 cttcagccatgcatctctctcctcaggcacctgcccagtgcacagtatggatgcta 551
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 472 cttcagccatgcatctctctcctcagacacctgcccagtgcacagcatggatgcta 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_e23.g1 MSMg01no522_e23.g1 CHROMAT_FILE:
MSMg01no522_e23.g1 PHD_FILE: MSMg01no522_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
(541 letters)
>mm_chr9_55150629_55151569
Length = 941
Score = 847 bits (438), Expect = 0.0
Identities = 480/518 (92%), Gaps = 37/518 (7%)
Strand = Plus / Plus
Query: 1 catgactgtaaaccaaaactaaattgctctgtcagactttctgggaagtcaggagaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgactgtaaaccaaaactaaattgctctgtcagactttctgggaagtcaggagaatga 260
Query: 61 caacagctaaacccaaacagagcagttctagcagacatgggaaggaagcctctcggcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagctaaacccaaacagagcagttctagcagacatgggaaggaagcctctcggcttt 320
Query: 121 ggccctcacaaaactaacttggggttagcaatctattgtactgagttctccccttatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccctcacaaaactaacttggggttagcaatctattgtactgagttctccccttatttc 380
Query: 181 tgcgcaagctagtctttaaaccagaatgctctgctgtgatgatggagtgtctttaaacca 240
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgcaagctagtctttaaaccagaatgctctgctgtgatgatggagtg----------- 429
Query: 241 gaatgctctgctgtgatgatggagtgcctttacatgagagacagcccaatccaggactca 300
||||||||||||||||||||||||||||||||||
Sbjct: 430 --------------------------cctttacatgagagacagcccaatccaggactca 463
Query: 301 tttaaaaacaaacaaccccacaaaaaccccactagggctggagagatgactcagtagtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tttaaaaacaaacaaccccacaaaaaccccactagggctggagagatgactcagtagtta 523
Query: 361 agagcactggctactcttccagagggtccaggttcaattcccagcacctacatggcagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agagcactggctactcttccagagggtccaggttcaattcccagcacctacatggcagct 583
Query: 421 tgcacctgtctataattttaattccagggcttctgacaccctcatacagatatacacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgcacctgtctataattttaattccagggcttctgacaccctcatacagatatacacaca 643
Query: 481 gggaaaataccaatgaacataaaataaagataaactat 518
||||||||||||||||||| ||||||||||||||||||
Sbjct: 644 gggaaaataccaatgaacaaaaaataaagataaactat 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|