BAC Information

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BAC

Clone NameMSMg01-522E23
Chromosome9 (Build37)
Map Location 55,150,829 - 55,276,794
singlet/doubletdoublet
Overlap geneAI118078
Upstream geneGldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneEtfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522E23.T7 (MSMg01no522_e23.b1)MSMg01-522E23.TJ (MSMg01no522_e23.g1)
ACCAG592898AG592899
length763767
length of high quality
(start - end)
552 (54 - 605)541 (86 - 626)
definitionCHROMAT_FILE: MSMg01no522_e23.b1 PHD_FILE: MSMg01no522_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:53 2005CHROMAT_FILE: MSMg01no522_e23.g1 PHD_FILE: MSMg01no522_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,276,259 - 55,276,794)(55,150,829 - 55,151,309)
sequence
CCCCNTNNNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGA
GGATCCGCGGAATTCTCTGTACCACACAGATTTCATTCCGTTACTTTTGT
CTCTGTCCCTCCCTCTCTTCTTCCTTAGACAGGGCCTTGTGTAGTCTCAG
ACAGCTCCAACCTCACCTTCAACTTGTGATACTTGGCCACACTCCTGAGT
GCTGGGATGCTGTTCTGCCTGGCTCCATGCAGCTCTGAGACTGCAACTCA
AAGCTTCCTGCACTAGGCAGCCCGACTGGGCCACACCCCCGGGGCCTATT
TTCATTCTCAGTCCATCCATTTCTATGAAAGCAGAACAGGTTTACAACGG
AAAGCATTTAGTCACTCACGTTGGTGTGGCCTAGCGGTGACCAGCATTGG
TGGCCTAGCGTTGGGCATCTCCCAGGGTCACTATCTGCATGTTTCATTGA
CCTCTGTCAGGGACGAACCTCTGGGTGTGTGCTGCTGCACTGGGAGCAGG
GCAGGGGAACAGCATATGACTGGGGAGGGGGACCGTCTATAACTCTTACT
TCAGCCATGCATCTCTCTCCTCAGGCACCTGCCCAGTGCACAGTATGGAT
GCTAAGCTTCTGGTTCCATTTCTCCAGAGGACAAACCCATGGCCTCTTTA
GGGTGTGGTGTGGGCTCCTGGNCAGACGAGCCTTANGATGTTTTACACTT
CTGTATAGACTTTTACTCAACCCTTTTCCCTGATGTATCACACCATGTCC
CCATCCTCCAGAA
TTTTATTNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGACTGTAAACCA
AAACTAAATTGCTCTGTCAGACTTTCTGGGAAGTCAGGAGAATGACAACA
GCTAAACCCAAACAGAGCAGTTCTAGCAGACATGGGAAGGAAGCCTCTCG
GCTTTGGCCCTCACAAAACTAACTTGGGGTTAGCAATCTATTGTACTGAG
TTCTCCCCTTATTTCTGCGCAAGCTAGTCTTTAAACCAGAATGCTCTGCT
GTGATGATGGAGTGTCTTTAAACCAGAATGCTCTGCTGTGATGATGGAGT
GCCTTTACATGAGAGACAGCCCAATCCAGGACTCATTTAAAAACAAACAA
CCCCACAAAAACCCCACTAGGGCTGGAGAGATGACTCAGTAGTTAAGAGC
ACTGGCTACTCTTCCAGAGGGTCCAGGTTCAATTCCCAGCACCTACATGG
CAGCTTGCACCTGTCTATAATTTTAATTCCAGGGCTTCTGACACCCTCAT
ACAGATATACACACAGGGAAAATACCAATGAACATAAAATAAAGATAAAC
TATGTGGGGAGCCGCCCTCACATTCGCCGTTACAAGATGGCGCTGACATC
CTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTT
TTTCACCCCATGTGCTCTGCCTTCCCCGTGACGACAACTCGGGCGATGGG
CTGCAGGCAATCAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_e23.b1 MSMg01no522_e23.b1 CHROMAT_FILE:
MSMg01no522_e23.b1 PHD_FILE: MSMg01no522_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
         (552 letters)



>mm_chr9_55275843_55276794
          Length = 952

 Score =  990 bits (512), Expect = 0.0
 Identities = 530/536 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  gtaccacacagatttcattccgttacttttgtctctgtccctccctctcttcttccttag 75
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gtaccacacagatctcattccgttacttttgtctctgtccctccctctcttcttccttag 893

                                                                       
Query: 76  acagggccttgtgtagtctcagacagctccaacctcaccttcaacttgtgatacttggcc 135
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 892 acagggccttgtgtagtctcaggcagctccaacctcaccttcaacttgtgatacttggcc 833

                                                                       
Query: 136 acactcctgagtgctgggatgctgttctgcctggctccatgcagctctgagactgcaact 195
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 832 acactcctgagtgctgggatgctgctctgcctggctccatgcagctctgagactgcaact 773

                                                                       
Query: 196 caaagcttcctgcactaggcagcccgactgggccacacccccggggcctattttcattct 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 caaagcttcctgcactaggcagcccgactgggccacacccccggggcctattttcattct 713

                                                                       
Query: 256 cagtccatccatttctatgaaagcagaacaggtttacaacggaaagcatttagtcactca 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cagtccatccatttctatgaaagcagaacaggtttacaacggaaagcatttagtcactca 653

                                                                       
Query: 316 cgttggtgtggcctagcggtgaccagcattggtggcctagcgttgggcatctcccagggt 375
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cgttggcgtggcctagcggtgaccagcattggtggcctagcgttgggcatctcccagggt 593

                                                                       
Query: 376 cactatctgcatgtttcattgacctctgtcagggacgaacctctgggtgtgtgctgctgc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cactatctgcatgtttcattgacctctgtcagggacgaacctctgggtgtgtgctgctgc 533

                                                                       
Query: 436 actgggagcagggcaggggaacagcatatgactggggagggggaccgtctataactctta 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actgggagcagggcaggggaacagcatatgactggggagggggaccgtctataactctta 473

                                                                   
Query: 496 cttcagccatgcatctctctcctcaggcacctgcccagtgcacagtatggatgcta 551
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 472 cttcagccatgcatctctctcctcagacacctgcccagtgcacagcatggatgcta 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no522_e23.g1 MSMg01no522_e23.g1 CHROMAT_FILE:
MSMg01no522_e23.g1 PHD_FILE: MSMg01no522_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:53 2005
         (541 letters)



>mm_chr9_55150629_55151569
          Length = 941

 Score =  847 bits (438), Expect = 0.0
 Identities = 480/518 (92%), Gaps = 37/518 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgactgtaaaccaaaactaaattgctctgtcagactttctgggaagtcaggagaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgactgtaaaccaaaactaaattgctctgtcagactttctgggaagtcaggagaatga 260

                                                                       
Query: 61  caacagctaaacccaaacagagcagttctagcagacatgggaaggaagcctctcggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagctaaacccaaacagagcagttctagcagacatgggaaggaagcctctcggcttt 320

                                                                       
Query: 121 ggccctcacaaaactaacttggggttagcaatctattgtactgagttctccccttatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccctcacaaaactaacttggggttagcaatctattgtactgagttctccccttatttc 380

                                                                       
Query: 181 tgcgcaagctagtctttaaaccagaatgctctgctgtgatgatggagtgtctttaaacca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 381 tgcgcaagctagtctttaaaccagaatgctctgctgtgatgatggagtg----------- 429

                                                                       
Query: 241 gaatgctctgctgtgatgatggagtgcctttacatgagagacagcccaatccaggactca 300
                                     ||||||||||||||||||||||||||||||||||
Sbjct: 430 --------------------------cctttacatgagagacagcccaatccaggactca 463

                                                                       
Query: 301 tttaaaaacaaacaaccccacaaaaaccccactagggctggagagatgactcagtagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tttaaaaacaaacaaccccacaaaaaccccactagggctggagagatgactcagtagtta 523

                                                                       
Query: 361 agagcactggctactcttccagagggtccaggttcaattcccagcacctacatggcagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agagcactggctactcttccagagggtccaggttcaattcccagcacctacatggcagct 583

                                                                       
Query: 421 tgcacctgtctataattttaattccagggcttctgacaccctcatacagatatacacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgcacctgtctataattttaattccagggcttctgacaccctcatacagatatacacaca 643

                                                 
Query: 481 gggaaaataccaatgaacataaaataaagataaactat 518
           ||||||||||||||||||| ||||||||||||||||||
Sbjct: 644 gggaaaataccaatgaacaaaaaataaagataaactat 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)