Query= MSMg01no522_f17.b1 MSMg01no522_f17.b1 CHROMAT_FILE:
MSMg01no522_f17.b1 PHD_FILE: MSMg01no522_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:56 2005
(660 letters)
>mm_chr9_81334459_81335524
Length = 1066
Score = 1234 bits (638), Expect = 0.0
Identities = 654/662 (98%), Gaps = 6/662 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctaactgaatcctaatgccttcctgcccactaagggttcttagttttgcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctaactgaatcctaatgccttcctgcccactaagggttcttagttttgcat 264
Query: 65 ttcctttatttgcatttcctgtcactttcacattctaagtctttctatccagtgatttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctttatttgcatttcctgtcactttcacattctaagtctttctatccagtgatttga 324
Query: 125 acacacacctacttcaaaacaaa----gaaacaaacaaggtctgggaattactaatccta 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 acacacacctacttcaaaacaaacaaagaaacaaacaaggtctgggaattactaatccta 384
Query: 181 aaatttattccacagcactatgagaagttcttgctgtttttggaggagcatgatgtggag 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 aaatttattctacagcactatgagaagttcttgctgtttttggaggagcatgatctggag 444
Query: 241 acagaggctcctctccagagccttatcagtaactgagacagagttagaacccatcagtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagaggctcctctccagagccttatcagtaactgagacagagttagaacccatcagtct 504
Query: 301 tccagcccacagagactgagaccaatgcccacaagatgccttggtgctgagccacactaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccagcccacagagactgagaccaatgcccacaagatgccttggtgctgagccacactaa 564
Query: 361 cttctaggctggtgatggatatcaaatggaagtctactgtagatttttccctccagactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttctaggctggtgatggatatcaaatggaagtctactgtagatttttccctccagactc 624
Query: 421 ctggtctgtgcatagaccttagcaggtcttatagctttcactaacttctcaacagaccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggtctgtgcatagaccttagcaggtcttatagctttcactaacttctcaacagaccaa 684
Query: 481 cattctggaacaaactgttttatctctcctacatgtaaatagacaattaaaaa--tatat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 cattctggaacaaactgttttatctctcctacatgtaaatagacaattaaaaaaatatat 744
Query: 539 aaaacagctcaatttttaaaattcatacattttctgatatgtaattttaccataatgaaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaaacagctcaatttttaaaattcatacattttctgatatgtaattttaccataatgaaa 804
Query: 599 ggatggaaatgtgagaataatgaaagattttaaaagaattactaagtactatttacttct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggatggaaatgtgagaataatgaaagattttaaaagaattactaagtactatttacttct 864
Query: 659 ac 660
||
Sbjct: 865 ac 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1066
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1056
Effective search space: 686400
Effective search space used: 686400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_f17.g1 MSMg01no522_f17.g1 CHROMAT_FILE:
MSMg01no522_f17.g1 PHD_FILE: MSMg01no522_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:56 2005
(585 letters)
>mm_chr9_81540914_81541898
Length = 985
Score = 1079 bits (558), Expect = 0.0
Identities = 579/586 (98%), Gaps = 2/586 (0%)
Strand = Plus / Minus
Query: 1 cttg-tttcacatgctgaaaaaatataaaactccttctatcaacgtgatatttaacatgt 59
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 cttgcttt-acatgctgaaaaaatataaaactccttctatcaacgtgatatttaacatgt 735
Query: 60 aaactgtgttcctatacacaaaataaagcaatgttttcattaaaaacgtttaagttttta 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aaactgtgttcctatacacaaaataaagcaatgttttcattaaaaacgtttaagtttttg 675
Query: 120 ttaaagaaatttaccatcaatggttcttcattgagtagaaaatggtacgaaactaatgta 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtaaagaaatttaccatcaatggttcttcattgagtagaaaatggtacgaaactaatgta 615
Query: 180 agttaatcactcttgctcaagctcactcagcagaatcctttccttcagacagccactcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agttaatcactcttgctcaagctcactcagcagaatcctttccttcagacagccactcag 555
Query: 240 gtctcttacatagagccagtttgattccaaaagagccataatgtaatagtgggtcttgga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtctcttacatagagccagtttgattccaaaagagccataatgtaatagtgggtcttgga 495
Query: 300 gaagctgctagcatgcaattgatttgctagggcagtttcctgagccgcaaattaatcgta 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 494 gaagctgctagcatgcaattgatttgctcgggcagtttcctgagccgcaaattaatcgta 435
Query: 360 tttttagtaaggaatggggacaaatctaacatccagaagtattagaacaggtggaaaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttttagtaaggaatggggacaaatctaacatccagaagtattagaacaggtggaaaaga 375
Query: 420 aaatgcagagcttcctaagaagtggaccatgagaagatgaaagctgattaggagagggat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaatgcagagcttcctaagaagtggaccatgagaagatgaaagctgattaggagagggat 315
Query: 480 tgggagggaggcagtgattaactcctcctccaggctctagtggggtcagtactcctacag 539
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 314 tgggaaggaggcagtgattaactcctcctccaggctctagtagggtcagtactcctacag 255
Query: 540 ctccaatcaacactgagcttagattaaaaacatactatggccttgc 585
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctccaatcaacactgagcttagattaaaaacatactatggccttgc 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
