BAC Information

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BAC

Clone NameMSMg01-523B13
Chromosome9 (Build37)
Map Location 55,407,142 - 55,407,489
singlet/doubletsinglet
Overlap geneZfp291
Upstream geneCib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2
Downstream geneLOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523B13.T7 (MSMg01no523_b13.b1)MSMg01-523B13.TJ (MSMg01no523_b13.g1)
ACCAG593499AG593500
length777744
length of high quality
(start - end)
285 (50 - 334)348 (79 - 426)
definitionCHROMAT_FILE: MSMg01no523_b13.b1 PHD_FILE: MSMg01no523_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:54 2005CHROMAT_FILE: MSMg01no523_b13.g1 PHD_FILE: MSMg01no523_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA
CCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACA
TAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAG
GGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGA
TATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAA
ACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATAAACTCAAAC
AAGTCAATGGGCTTTCTCTATACAAAGAATAAACAGGGTGAGAAAGAAAT
TAGGGAAACAACACCCTTCTCAATAGTCACCAATAATATAAAATATCTTG
GCGGGGCTCTAACTAATGAGGGGAAAGATCTGGATGATAAAAACTTCTAA
TCTCTGAAGAAAGAAAATTAAGAAGATCTCTCAAGAAGGAAAGAACCCCC
ACGGTCCTGGGAATGGCAGGAATCAACATTGTGAAAAAAGGGCTATTTTT
GGCAAAAGAAAACTCACAGGATTTTAATGGCAATTCTCCCCTCTAAAAAT
TCCAACTTCTATATCTTTCTACCTAATTGGGTAAGGGAAGCAATTTTGGT
CTAATTTTGTTCTCGGGATTAATAAAN
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATTACATAGAGAAATGTT
GTATCAAAAAAAAATGGTGGTAATCTAAGAACAGGAGATCTGAGGGTCTG
CCTTTACTCACTGATCAGCTGAGTAGCCTTTGGCAAACTGTTCAATTGCT
CTGGGTTTGAGAGTATATAATATTTTTAAAAGTATTTTCTTTGAAGCCTC
TCACATACAAATCAAATAGTTCAGGTTCACAAAGTAAAACAACAGCAGTA
TTACAAAACGCCTCAATAAAGAAAAATAAAGACAAAGAATACTGGATTTT
TAAACATATTCTTTCTCACTGAAAGATTTCTACATTTTAAATTTCAGAAA
AATAATAGGAAAACTATTTGGCTAGATTAGAAAGGCTTTGCAGCCATCCT
TTAACCTTGCTCTGGGGAGAGCCATGGCAGCATAGCTCCTCTGGTCTCCT
AGAGAGAGGCCAGGGGCATAATTCTGTCCTGTTGCCCTGCTGACCATAAG
GGTTTCTTTAGTGTCATTGATGAGGGAATCACACGTGGCAGACAAGAGTC
CCCTGAGGACTAACTACTCTTTTGTTACTAGGAATAATTCTACCAGTTGT
AGCTTTAGAAAAAGGAAACAGAATTCTTGGAATGTGAAAGCAGGACCACG
AGGATCTGAATGCCCCAGAAAAAGGACTCCTGGTAAAAGATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_b13.g1 MSMg01no523_b13.g1 CHROMAT_FILE:
MSMg01no523_b13.g1 PHD_FILE: MSMg01no523_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:54 2005
         (348 letters)



>mm_chr9_55406942_55407689
          Length = 748

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%), Gaps = 2/349 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaattacatagagaaatgttgtatcaaaaaaaaa-tggtggtaatctaagaacaggag 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cagaattacatagagaaatgttgtatcaaaaaaaaaatggtggtaatctaagaacaggag 260

                                                                       
Query: 60  atctgagggtctgcctttactcactgatcagctgagtagcctttggcaaactgttcaatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgagggtctgcctttactcactgatcagctgagtagcctttggcaaactgttcaatt 320

                                                                       
Query: 120 gctctgggtttgagagtatataatatttttaaaagtattttctttgaagcctctcacata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctgggtttgagagtatataatatttttaaaagtattttctttgaagcctctcacata 380

                                                                       
Query: 180 caaatcaaatagttcaggttcacaaagtaaaacaacagcagtattacaaaacgcctcaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatcaaatagttcaggttcacaaagtaaaacaacagcagtattacaaaacgcctcaat 440

                                                                       
Query: 240 aaagaaaaataaagacaaagaatactggatttttaaacatattctttctcactgaaagat 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaaaa-aaagacaaagaatactggatttttaaacatattctttctcactgaaagat 499

                                                            
Query: 300 ttctacattttaaatttcagaaaaataataggaaaactatttggctaga 348
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctacattttaaatttcagaaaaataataggaaaactatttggctaga 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)