BAC Information

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BAC

Clone NameMSMg01-523M12
Chromosome9 (Build37)
Map Location 110,618,058 - 110,618,560
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12
Downstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523M12.T7 (MSMg01no523_m12.b1)MSMg01-523M12.TJ (MSMg01no523_m12.g1)
ACCAG594016AG594017
length748748
length of high quality
(start - end)
436 (68 - 503)510 (78 - 587)
definitionCHROMAT_FILE: MSMg01no523_m12.b1 PHD_FILE: MSMg01no523_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:49 2005CHROMAT_FILE: MSMg01no523_m12.g1 PHD_FILE: MSMg01no523_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCTTTTTCAGTCACATGACTCTGGCTTTAGAGTCAAGTGTAGA
AGGGGTTACTGGGACAATTGATGCTGGTTGGCTGAAGCTAAGAAATTAGC
AGTGATTAAGAAGAGACCAGAATCACTGAGGTAAAATCGTCTGGGAAATG
TTTTCTGAGAGCACAAAGAAGCTGTGTTCCAGAGATAGACACCATGCTGG
CATCTAGACTTGGTAATAATAAGATTCACCCAGATGGTACTGGTTTTGAA
GGTATGAAGGGGTCATGGAGAACAGCTGAGGCTTGACACTGTGAAAGGCC
ATTGTTGAAGGTGCGGCCTCAGATGCAGTTGACATCCCAGGACTGCAAAG
AAGCTGAGGCTTGGCACCATGAATAGAGCTTCTGAGAGAATATTTATTGG
TGAAGCCTAGTTACAGCAGAAGACCCCAGTGTGTTGAAAATGGCAATACC
ATGGGATGATCACCAAGAATAGCAGAAGCAGTGGGGTGGAGTCAACCAGA
GCCTATAGTGATGTAGAAAGCAGAGCTGGAGATGTGACCAAAACCCTTTA
GTGGAGCTCAGAAGATCACATGTGGATCCCAGACATTGAACAAGAAGCTG
TTACATTGAAATTGCCTTGAAAACACCAGGATGTTTGAGATGCCCGAACC
CTGGGATACTTGCTGAGGAAAGTTGCTATCCAGGAACTAGAACCCCCN
GGCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAATTTCATGTATTTTGCCTG
AGTGTATGTTTGTAACCAGATCTCTGCCTGGTGCCCATGGAGGCCAGAAG
AGGGCATCAGATCCCCTGGAACTGTAGTTCCAGATGGTTGTGAGCAAAGG
GAGCTACATAGCCAAGGAAGCTGAACCAATAGCCCTAAAATGAATGTCTG
TTTTATTCTCAGAGAAATAAGAGGAGCTGTCCCTCTTGACACAACAAGAA
TTAGATGTAAGAACTGATTAGAAACCCTGAAAATCAGCTCAAAGTGGTGT
TACACACCTGTAATCCCAGATCTTCTTAGATTGAGGCAGGAAGTTGAGGC
CAGCCTGTGCTATAGGGAGATTCTCTCAAAAGAGAACAGCCTAACCCCAG
ATGGAAAATAGGGACTAGCAGATCTCCGGTGAGCACAGGATTGGCAAAAA
GCAGCAGAGACAGCTGGAGTAACCTCAGTGCAATGGAGACTCAGACACGT
GTTCTCAGCTACACTGCTGTGCTGGGCGTGGGGATCAGGAATGTTTGCAC
AGTGTGGTGGCAGACACTGAGACCATTTTGGAAAGGTGTGCGTATTACTC
TGACCCTTATTGTCCTGGTGAATGGTACCCGTGCACACCATGTGTGGGGT
CAGGAATTTCATAGGATCACGATAGCTAATGTGCTCACACCTCAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_m12.g1 MSMg01no523_m12.g1 CHROMAT_FILE:
MSMg01no523_m12.g1 PHD_FILE: MSMg01no523_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:49 2005
         (510 letters)



>mm_chr9_110617854_110618763
          Length = 910

 Score =  928 bits (480), Expect = 0.0
 Identities = 500/510 (98%), Gaps = 7/510 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatttcatgtattttgcctgagtgtatgtttgtaaccagatctctgcctggtgccca 60
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 205 attaatttcatgtattttgcctgagtgta----tgtaaccagatctctgcctggtgccca 260

                                                                       
Query: 61  tggaggccagaagagggcatcagatcccctggaactgtagttccagatggttgtgagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaggccagaagagggcatcagatcccctggaactgtagttccagatggttgtgagcaa 320

                                                                       
Query: 121 agggagctacatagccaaggaagctgaaccaatagccctaaaatgaatgtctgttttatt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggagctacatagccaaggaaactgaaccaatagccctaaaatgaatgtctgttttatt 380

                                                                       
Query: 181 ctcagagaaataagaggagctgtccctcttgacacaacaagaattagatgtaagaactga 240
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagagaaataagagtagctatccctcttgacacaacaagaattagatgtaagaactga 440

                                                                       
Query: 241 ttagaaaccctgaaaatcagctcaaagtggtgttacacacctgtaatcccagatcttctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 441 ttagaaaccctgaaaatcagctcaaagtggtgttacacacctgtaatcccagatctt--- 497

                                                                       
Query: 301 agattgaggcaggaagttgaggccagcctgtgctatagggagattctctcaaaagagaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agattgaggcaggaagttgaggccagcctgtgctatagggagattctctcaaaagagaac 557

                                                                       
Query: 361 agcctaaccccagatggaaaatagggactagcagatctccggtgagcacaggattggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agcctaaccccagatggaaaatagggactagcagatctccggtgagcacaggattggcaa 617

                                                                       
Query: 421 aaagcagcagagacagctggagtaacctcagtgcaatggagactcagacacgtgttctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaagcagcagagacagctggagtaacctcagtgcaatggagactcagacacgtgttctca 677

                                         
Query: 481 gctacactgctgtgctgggcgtggggatca 510
           ||||||||||||||||||||||||||||||
Sbjct: 678 gctacactgctgtgctgggcgtggggatca 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)