Query= MSMg01no524_g10.b1 MSMg01no524_g10.b1 CHROMAT_FILE:
MSMg01no524_g10.b1 PHD_FILE: MSMg01no524_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:40 2005
(570 letters)
>mm_chr9_15546636_15547605
Length = 970
Score = 967 bits (500), Expect = 0.0
Identities = 551/568 (97%), Gaps = 2/568 (0%)
Strand = Plus / Minus
Query: 5 gaattcctaggagtc-acatataaaatctttgtttcctttggtaaggggttgggatagtg 63
||||||||| ||||| | |||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 947 gaattcctaagagtcaatatataaaatctttgtttcctttggaaaggggttgtgatagtg 888
Query: 64 ttttctg-aaccattgtcccattttataaatccagtgatatgacctagttatctcaaggc 122
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ctttctgaaaccattgtcccattttataaatccagtgatatgacctagttatctcaaggc 828
Query: 123 ttttccaaagggcacatcaaattctacagatttatggaacacaatatgaggtattaaaac 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 827 ttttccaaagggcacatcaaattctacagatttatggaacacaatatgaggtgttaaaac 768
Query: 183 acatatacaattcatggttttcaaatcacagagctgacacacccatcatctcaacgttta 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 acgtatacaattcatggttttcaaatcacagagctgacacacccatcatctcaacgttta 708
Query: 243 tgagtccttcgtggggtcagcacattttagctcctttgacactgtgctaagttgagtgat 302
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgagtcctttatggggtcagcacattttagctcctttgacactgtgctaagttgagtgat 648
Query: 303 gcatgtcactgggcacatgggtctcagtgtcctctcgtttttcatcatactcttagatct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gcatgtcactgggcacatgggtctcagtgtcctctcgtttttcatcatactcttagatct 588
Query: 363 ttgaggctctgaatatccataaagactgttcacactgttaactaagaaaatattcacaca 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctgaggctctgaatatccataaagactgttcacactgttaactaagaaaatattcacaca 528
Query: 423 tctgtctcacacatacacagtaataagaatgcaataaaacttaaataacaaaaaattagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctgtctcacacatacacagtaataagaatgcaataaaacttaaataacaaaaaattagg 468
Query: 483 aggggataccacaatgtctcagtggctaaagcttgcctcccaagccgaggcccgaagttt 542
|||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 467 aggggataccactatgtctcagtggctaaagcttgcctcccaagccgaggacctaagttg 408
Query: 543 aaccctaaaatcccacgtaaagatggaa 570
|| |||||||||||||||||||||||||
Sbjct: 407 aatcctaaaatcccacgtaaagatggaa 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_g10.g1 MSMg01no524_g10.g1 CHROMAT_FILE:
MSMg01no524_g10.g1 PHD_FILE: MSMg01no524_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:40 2005
(625 letters)
>mm_chr9_15400039_15401063
Length = 1025
Score = 1195 bits (618), Expect = 0.0
Identities = 624/626 (99%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 1 tgtaaattggttgcaagaacatgagaacaattagaaggatttgttgatattgataaatct 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgtaaattggttgcaagaacataagaacaattagaaggatttgttgatattgataaatct 259
Query: 61 agaattatcttcttagctttggattcaataagcccgagtcaacatgagaattaattgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaattatcttcttagctttggattcaataagcccgagtcaacatgagaattaattgatt 319
Query: 121 ttt-aaaactaggatgtagttttgaaattggtacaattttgtctgagagtcaaatcaatt 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttaaaactaggatgtagttttgaaattggtacaattttgtctgagagtcaaatcaatt 379
Query: 180 atttgcaatgtgtcaaatatgtggtaaaatgattttgttattgggatattctcaagcatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atttgcaatgtgtcaaatatgtggtaaaatgattttgttattgggatattctcaagcatt 439
Query: 240 cctggatcaatttaagcaccagaagctcccttaattgagatattttatgaaatctaaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctggatcaatttaagcaccagaagctcccttaattgagatattttatgaaatctaaata 499
Query: 300 tagatcaggcatttaacattgaaatgtaggtatgttgtaggtatagcatatatacagatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagatcaggcatttaacattgaaatgtaggtatgttgtaggtatagcatatatacagatt 559
Query: 360 tctgatgacttaatatgaagaccaagatatcttgataatttttacatcttgattatattt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctgatgacttaatatgaagaccaagatatcttgataatttttacatcttgattatattt 619
Query: 420 tagatgacaatgttttgatacacacatatattagcttggataaatatatgacttacacta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagatgacaatgttttgatacacacatatattagcttggataaatatatgacttacacta 679
Query: 480 agttctctcacttctctgtagctctttaatgtgctacaagaagattttaaatcaagtttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agttctctcacttctctgtagctctttaatgtgctacaagaagattttaaatcaagtttg 739
Query: 540 actctggagctcagttggcatagtgctttatctagcatccatgaagccctgggttctacc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actctggagctcagttggcatagtgctttatctagcatccatgaagccctgggttctacc 799
Query: 600 ttttgttctgcgaaaactgaatatga 625
||||||||||||||||||||||||||
Sbjct: 800 ttttgttctgcgaaaactgaatatga 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
