BAC Information

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BAC

Clone NameMSMg01-524G21
Chromosome9 (Build37)
Map Location 111,599,686 - 111,786,606
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524G21.T7 (MSMg01no524_g21.b1)MSMg01-524G21.TJ (MSMg01no524_g21.g1)
ACCAG594509AG594510
length777782
length of high quality
(start - end)		625 (42 - 666)572 (71 - 642)
definitionCHROMAT_FILE: MSMg01no524_g21.b1 PHD_FILE: MSMg01no524_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:42 2005CHROMAT_FILE: MSMg01no524_g21.g1 PHD_FILE: MSMg01no524_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,599,686 - 111,600,307)(111,786,095 - 111,786,606)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCGGAATTC
TCAGCCTTCTCTAGGACATATATATCACATCACCCCAACCCACCCCCCAT
TTCAAGGCTCAGAGATCACTGTGGAAGAGAGGGCAGAAAAACTGTAAGAT
CCAGTGGCTGTAGATGACCATCAGGACACAGCGGGGTTTTACACATATGA
ACTCATAGTGCTTGTAACAGCATGCACAAGACTGGTGCTAACTCAGGTCA
GACAAAATCCCAGCATGGGGAGGGGAGGTCTGTACAAAGTCCAACCCCTG
ATGGAGGAACTATTGGCCATTAGTAGTTTCTGGGAGAGAAAGAGTCAGCT
CTGTTTAAAGAGAGTCACCTCTAGTTGGCCAAAGGCACTCCTGTGAAAGG
CCACACATCCAAGCGTATATAAACAACACAAATTGGAGCTGATGGGTTAA
GAAGAGAGAACAGAATACAGGGTGGGTAGCAAAGTAAGCGGATCTGAGAA
GAGCTGTGAAGGAGTAAGTGTGATCAAAACAGTGTGTGGGATGGTCAGAC
AACTAATAAACACGAAGAAAGGGCAACAAAGCTGAGTTCAGATAGATGGA
TACCTGGTCTAAGCCAGTTTCTGTGGAGCAATGAGCCACCGTCTATTCTG
CTGTTCAGCAGTCACAGTAGTTGTCACTCCAGAGTATGATAAAATGATCA
ACTACATGATTCTTTTCTTCAGTTTCAAGTTCACTATGCTGGTATGTAAA
ACATCTACTAATATTTTTCCAATAATN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCAATATGCTGTTCTTGCTTTCTTCTGG
GGTGTAAATTGGCAAAGATGACCTGATCAGAATCAAACAAAGCACAGGCA
GGTGGTAGGAGGCAGGCATGTGCACATGTGCTTCATTAGGTAGAAGAGAG
GGCTCTGGGTAGGAATAGCATACCTTGTAATCAGATAGAAATATGACTCA
CTGAGTAGTAGTTGAATTGGGTAACATAGATCAGATTGTGAAGCCAGTCT
ATAGAGTGTGAGCTTTAATACAGAGGTGTAAGAATATTTGCAAAGCCACC
AATAGTCCCAAGAAGGAGTTGTCCTTGAGATGAGAGGAAACAGTGTGGAA
AGGGTCTGAGATTTGGAATACTTTATAGGAAGGGCTTTCTGACTAGGACT
CCAATGACTGAGAGAACAGAGTCAGCAATGAACAAATGGGATCTCATGAA
ATCAAAACCTTCTATGCAGCAAAAGGTGCTTTCAACCAACTGAAGAGGCA
GCCTACAGAATGGGGGAAAGTCTTTACCAGTTAAGTACCTGGTGAAGGCT
TGCTGCCAAGAATATACAAAGAATGCNAGAAACTAAACATCAAGGAGACA
AATGACCCCATCAAACCAACGACACTAACATGGGCTACGGACCTGAACAC
AGTGTTCTCAAAAGAAGATTTATGAAAATGGATACAAAACATCCTTAAAC
TGTTTGATATCATTAGCCACCACGAAAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_g21.b1 MSMg01no524_g21.b1 CHROMAT_FILE:
MSMg01no524_g21.b1 PHD_FILE: MSMg01no524_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:42 2005
         (625 letters)



>mm_chr9_111599483_111600507
          Length = 1025

 Score = 1172 bits (606), Expect = 0.0
 Identities = 618/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcagccttctctaggacatatatatcacatcaccccaacccaccccccatttca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcagccttcactaggacatatatatcacatcaccccaacccaccccccatttca 263

                                                                       
Query: 64  aggctcagagatcactgtggaagagagggcagaaaaactgtaagatccagtggctgtaga 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 aggctcagagatcactgtggaagagaggacagaaaaactgtaagatccagtggctgtaga 323

                                                                       
Query: 124 tgaccatcaggacacagcggggttttacacatatgaactcatagtgcttgtaacagcatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaccatcaggacacagcggggttttacacatatgaactcatagtgcttgtaacagcatg 383

                                                                       
Query: 184 cacaagactggtgctaactcaggtcagacaaaatcccagcatggggaggggaggtctgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaagactggtgctaactcaggtcagacaaaatcccagcatggggaggggaggtctgta 443

                                                                       
Query: 244 caaagtccaacccctgatggaggaactattggccattagtagtttctgggagagaaagag 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaagtccaacccctgacggaggaactattggccattagtagtttctgggagagaaagag 503

                                                                       
Query: 304 tcagctctgtttaaagagagtcacctctagttggccaaaggcactcctgtgaaaggccac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagctctgtttaaagagagtcacctctagttggccaaaggcactcctgtgaaaggccac 563

                                                                       
Query: 364 acatccaagcgtatataaacaacacaaattggagctgatgggttaagaagagagaacaga 423
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 acatccaagcgtatataaacaacacagattggagctgatgggttaagaagagagaacaga 623

                                                                       
Query: 424 atacagggtgggtagcaaagtaagcggatctgagaagagctgtgaaggagtaagtgtgat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atacagggtgggtagcaaagtaagcggatctgagaagagctgtgaaggagtaagtgtgat 683

                                                                       
Query: 484 caaaacagtgtgtgggatggtcagacaactaataaacacgaagaaagggcaacaaagctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaaacagtgtgtgggatggtcagacaactaataaacacgaagaaagggcaacaaagctg 743

                                                                       
Query: 544 agttcagatagatggatacctggtctaagccagtttctgtggagcaatgagccaccgtct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agttcagatagatggatacctggtctaagccagtttctgtggagcaatgagccaccgtct 803

                                 
Query: 604 attctgctgttcagcagtcaca 625
           ||||||||||||||||||||||
Sbjct: 804 attctgctgttcagcagtcaca 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_g21.g1 MSMg01no524_g21.g1 CHROMAT_FILE:
MSMg01no524_g21.g1 PHD_FILE: MSMg01no524_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:42 2005
         (572 letters)



>mm_chr9_111786095_111787066
          Length = 972

 Score =  928 bits (480), Expect = 0.0
 Identities = 504/512 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccaatatgctgttcttgctttcttctggggtgtaaattggcaaagatgacctgatcag 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 512 tcccaatatgctgttcttgctttcttctgtggtgtaaattggcaaagatgacctgatcag 453

                                                                       
Query: 61  aatcaaacaaagcacaggcaggtggtaggaggcaggcatgtgcacatgtgcttcattagg 120
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 452 aatcaaacaaagcacaggcaggtggtaggaggcagacatgtgcacacgtgcttcattagg 393

                                                                       
Query: 121 tagaagagagggctctgggtaggaatagcataccttgtaatcagatagaaatatgactca 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 392 tagaagagagggctctgggtaggaatagcataccttgaaatcagatagaaatatgactca 333

                                                                       
Query: 181 ctgagtagtagttgaattgggtaacatagatcagattgtgaagccagtctatagagtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgagtagtagttgaattgggtaacatagatcagattgtgaagccagtctatagagtgtg 273

                                                                       
Query: 241 agctttaatacagaggtgtaagaatatttgcaaagccaccaatagtcccaagaaggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agctttaatacagaggtgtaagaatatttgcaaagccaccaatagtcccaagaaggagtt 213

                                                                       
Query: 301 gtccttgagatgagaggaaacagtgtggaaagggtctgagatttggaatactttatagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gtccttgagatgagaggaaacagtgtggaaagggtctgagatttggaatactttatagga 153

                                                                       
Query: 361 agggctttctgactaggactccaatgactgagagaacagagtcagcaatgaacaaatggg 420
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 152 agggctttctgactaggactccaatgactaagggaacagagtcagcaatgaacaaatggg 93

                                                                       
Query: 421 atctcatgaaatcaaaaccttctatgcagcaaaaggtgctttcaaccaactgaagaggca 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 92  atctcatgaaatcaaaaacttctatgcagcaaaaggtgctttcaaccaactgaagagaca 33

                                           
Query: 481 gcctacagaatgggggaaagtctttaccagtt 512
           ||||||||||||||||||||||||||||||||
Sbjct: 32  gcctacagaatgggggaaagtctttaccagtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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