BAC Information

Click to search

BAC

Clone NameMSMg01-524O06
Chromosome9 (Build37)
Map Location 20,132,910 - 20,133,567
singlet/doubletsinglet
Overlap geneOlfr18
Upstream geneOlfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873
Downstream geneZfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524O06.T7 (MSMg01no524_o06.b1)MSMg01-524O06.TJ (MSMg01no524_o06.g1)
ACCAG594860AG594861
length758762
length of high quality
(start - end)		680 (35 - 714)660 (64 - 723)
definitionCHROMAT_FILE: MSMg01no524_o06.b1 PHD_FILE: MSMg01no524_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:18 2005CHROMAT_FILE: MSMg01no524_o06.g1 PHD_FILE: MSMg01no524_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATCC
CCTTTGGGGCCCTCAATCATTTCCCCAACTCTTCCATAAGAGTCCCTAAG
GTCCATTCAAAGTTTGGTTATGGGTCTCTAGGAAGCAGATGGAGGGAGAG
AACTAAGAGAGAAACGGAATAGAGAGGGCAAATGGGGGGGTGGGGGAGAG
ACAGGAGAGGGAGGGTCAGAGGCCGGGAGAGTGAATGGAGATCTGTGGCT
GGCAGGGGTGGGGGCATCTCTCGGATATGTCAGAGACATACAGTTGGGCA
GGCTCCCCATAGTCTACAGTGGTGACTTTAGGTGAAACTCATACCAGTGG
AGATATGAAACCTGAAATGACTACCTCCTGTAGCCAGGTAGGACCCACCC
AGGGGAGGAATAAGGACACTACCCAACCCACAAAACTTTTGACACAAAAT
TTGTCCTGTCTCTAAGAAATGCAGGGTCAAAGAAGGAACAGAGACTGAAG
GAGTTGCTTACCAATTAATAGTATTGGAGATTGGTGCTTTTGGAAAGTAA
CAATTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGATTGTCCTGGAAC
TCACTCTGTAGACCAGGCTGTCCTTGAACTCAGAAATCTGTCTGCCTCTG
CCTCCCAAGTTCTGGGATTAAAGGTGTGTGCCACCACTGCCCAGCTGAAC
ATAGTTTTTTTTAAAATATGTTTGTTTATTTATAATTTAGCTGGTGTCCC
CTTCTAGC

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTGCAGATAACTGGCATATAAAATGTTTTCTGATTA
TTAACATTTGACTTTAATTTAGAATCTACAGGATATAGTTTCAGCAATTA
TACTGTTTACTATTATATATTGGAGGAAATTTGTTTTAAAAATTTATTCC
TGTTTGTTTATAGATCTGATGCTGAAGTAGATAATGCATGTAGAAACATC
TACATAAAAGTTAAAAAAATACCCATCATCACTGTGATGATAGTTAACAG
TTTTACTTTCATATTTATATTGATATCAGACTCATTACTATAATGAGTTG
TGAGAATAAGCTTATTTCATAACGTTTGTATTGGTGCAAATTTGAATGTA
GGTAGATTTGCAGATTTGCTATATGGAAAAAATCCCTCTGACATCTAGCT
TTTTGTGTGACATCCAGCATCATTCCTATTATATTTCACACTTGAGTCCT
AAATGAATAATGTGTCAAGGTCCCCATATCCTAGAATGGGTATATGGGTA
TCCATATATATATGGATTTGACATTATTTTGATAACATCTAACTAAAGTT
TTATTTTTGATTTAAAATTAACTCTTTAAAATTTTAAAGCTGTTTGACCG
TCATTCATTTGTTCAATGTATTTTAGTCACCTTACCCTTACCTTTTCTTC
CCTTACTCTCTTCCGTTTCCCACTAGATCCCTTTTTCTCAGGATCCACAT
GAGAAAGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_o06.g1 MSMg01no524_o06.g1 CHROMAT_FILE:
MSMg01no524_o06.g1 PHD_FILE: MSMg01no524_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:18 2005
         (660 letters)



>mm_chr9_20132710_20133767
          Length = 1058

 Score = 1083 bits (560), Expect = 0.0
 Identities = 635/660 (96%), Gaps = 2/660 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcagataactggcatataaaatgttttctgattattaacatttgactttaatttaga 60
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 858 tgtgaagataactggcatataaaatgttttttgattattaacatttgactttaatttaga 799

                                                                       
Query: 61  atctacaggatatagtttcagcaattatactgtttactattatatattggaggaaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 798 atctacaggatatagtttcagcaattatactgtttactattatatattggaggaaatctg 739

                                                                       
Query: 121 ttttaaaaatttattcctgtttgtttatagatctgatgctgaagtagataatgcatgtag 180
           |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttttaaaattttattcctgttaatttatagatctgatgctgaagtagataatgcatgtag 679

                                                                       
Query: 181 aaacatctacataaaagttaaaaaaatacccatcatcactgtgatgatagttaacagttt 240
           ||||||||||||||||  ||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 678 aaacatctacataaaa-ataaaaaaatacacatcatcactgtgatgatagttaatagttt 620

                                                                       
Query: 241 tactttcatatttatattgatatcagactcattactataatgagttgtgagaataagctt 300
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tacttccatatttatattgagatcagactcattactataatgagttgtgagaataagctt 560

                                                                       
Query: 301 atttcataacgtttgtattggtgcaaatttgaatgtaggtagatttgcagatttgctata 360
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 atttcataacgattgtattggtgcaaatttgaatgtaggtagatttgtagatttgctata 500

                                                                       
Query: 361 tggaaaaaatccctctgacatctagctttttgtgtgacatccagcatcattcctattata 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgg-aaaaatccctctgacatctagctttttgtgtgacatccagcatcattcctattata 441

                                                                       
Query: 421 tttcacacttgagtcctaaatgaataatgtgtcaaggtccccatatcctagaatgggtat 480
           |||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 440 tttcactcttgagtcctaaatgaataatgtgtcaagtttcctatatcctagaatgggtat 381

                                                                       
Query: 481 atgggtatccatatatatatggatttgacattattttgataacatctaactaaagtttta 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 atgggtatccatatatatatggatttgacattattttaataacatctaactaaagtttta 321

                                                                       
Query: 541 tttttgatttaaaattaactctttaaaattttaaagctgtttgaccgtcattcatttgtt 600
           ||||||  ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 320 tttttgccttaaaattagctctttaaaattttaaagctgtttgactgtcattcgtttgtt 261

                                                                       
Query: 601 caatgtattttagtcaccttacccttaccttttcttcccttactctcttccgtttcccac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caatgtattttagtcaccttacccttaccttttcttcccttactctcttccgtttcccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1058
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1048
Effective search space:   681200
Effective search space used:   681200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |