BAC Information

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BAC

Clone NameMSMg01-525A16
Chromosome9 (Build37)
Map Location 50,702,436 - 50,876,001
singlet/doubletdoublet
Overlap geneSnf1lk2, Layn
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b
Downstream gene4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525A16.T7 (MSMg01no525_a16.b1)MSMg01-525A16.TJ (MSMg01no525_a16.g1)
ACCAG594975AG594976
length748748
length of high quality
(start - end)
628 (58 - 685)283 (65 - 347)
definitionCHROMAT_FILE: MSMg01no525_a16.b1 PHD_FILE: MSMg01no525_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:30 2005CHROMAT_FILE: MSMg01no525_a16.g1 PHD_FILE: MSMg01no525_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,702,436 - 50,703,063)(50,875,719 - 50,876,001)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATC
CCTCATGGTGGAAACAGATTCAAGAACCTTTGGGTTTAGCAGGACATAAC
TGGAAAGCTTGGTTCCTAGAGAAAGGAGTGTGATGAGCTGGGGAAGGCAC
ACACTACACAGGGCATGTGAAAGTTCCTTTGTTGTGCGTCTTTAAAATGT
CTAAGCCCTGTATGAAACTGCCTGCCCAACGTGCAAAGCTCCATAAGCTC
AGGACAGCACGGTGGGGAGCAGGAGTCACCAAAGGAATCACTCCAGCACA
GCACACTCCAGGAGCTTCCTGGAGGCTGTGCAGGAAGAGCCTGGCTTCCC
AGCACAGGGCCCAAGTTCCTGAGGCTCCCTGGTTTCTGCCTCAGCCTCCA
CTGGGATGAGGCTCCTGTTGTTACAGGTGAGGGCTCTGGAACCCTGCGCA
TCCTAACACTCGGCCATCCAGGGGCACTGTTGAGAAGGTGTTATTGCGTG
CTCCCAGACAGGGTTCTGGGATCAGTACCAGCTGCTACTCAAGTGTCCTG
GAAACACAACTTAGGCTCTGCTACTTTGTGATGGTCTTGAGGACACCCTG
CATCAACATCTTGATATGCCTTGAAGTACTTTGCTGTTGCCTAGCCTGGC
TTTAGGGAAATGTATCCCCTTTCTCTCCCACTATGTGATATATACAACAC
ACAATTTGCCTTGCTTTCACCAAGGTAAATGAATCTTTGGTGTAAAAC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGTACATGGAAACGTAACGATACTTCCTCCCTGAG
AAATAGTTCTAGCAAAGGAGAGGCTAGCAGATGCAAAAGAAGGGCTGAGA
AAGGAAAGGATCTAATTTACTTAAGATGAGAAGCAAGACTTATGAGAACA
CCCAGTGGAGGCTTCTGTTGTGAACAGGCACAAATGCTCGCCCATTTCCT
GTGTAGTCGGCTGTGGGAGCCTGGACTATGCTGACAGTTACTCTAGCAGC
CACGGGAGATTATTTCTTAGAGTTTAAAGAAACATACTAATGACAAGGCA
AGTGACAAAGAATCCCAACGTCACTGGCAGTCTTACACAGCGGGCACTTC
AATACATTTAAAAGCCCCTAGCCAACTGCCATCTTTATATTTGTCTTGCA
AATTTCACTTGCATTTGCTCCTAGATCTGCAAAGAGAGTTGGAGCTGATG
AGAAGTCTATTCATAGTCTTACTCCGCTGAGTTCCCAGACGCCTTTATTA
AAATTGACTTAGAATTAAATGAACACTCATCCTTGATCTGTCCTTGAAGT
TTCTCATTTTCCTGAAGCCGACTGCTTTAGCCCCATTTCCATAGTTTTTT
CCCTACGGATTAGAATGACTTGCTAATTGCATCCCTTATCTTTGGGGATT
GAACATTATCGCCTTTTTCAACTGTTCGAACCACCTGGCATTTTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_a16.b1 MSMg01no525_a16.b1 CHROMAT_FILE:
MSMg01no525_a16.b1 PHD_FILE: MSMg01no525_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:30 2005
         (628 letters)



>mm_chr9_50702236_50703263
          Length = 1028

 Score = 1191 bits (616), Expect = 0.0
 Identities = 625/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggaaacagattcaagaacctttgggtttagcaggacataactggaaagcttggttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggaaacagattcaagaacctttgggtttagcaggacataactggaaagcttggttcct 260

                                                                       
Query: 61  agagaaaggagtgtgatgagctggggaaggcacacactacacagggcatgtgaaagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaaaggagtgtgatgagctggggaaggcacacactacacagggcatgtgaaagttcc 320

                                                                       
Query: 121 tttgttgtgcgtctttaaaatgtctaagccctgtatgaaactgcctgcccaacgtgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgttgtgcgtctttaaaatgtctaagccctgtatgaaactgcctgcccaacgtgcaaa 380

                                                                       
Query: 181 gctccataagctcaggacagcacggtggggagcaggagtcaccaaaggaatcactccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccataagctcaggacagcacggtggggagcaggagtcaccaaaggaatcactccagc 440

                                                                       
Query: 241 acagcacactccaggagcttcctggaggctgtgcaggaagagcctggcttcccagcacag 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagcacactccaggggcttcctggaggctgtgcaggaagagcctggcttcccagcacag 500

                                                                       
Query: 301 ggcccaagttcctgaggctccctggtttctgcctcagcctccactgggatgaggctcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcccaagttcctgaggctccctggtttctgcctcagcctccactgggatgaggctcctg 560

                                                                       
Query: 361 ttgttacaggtgagggctctggaaccctgcgcatcctaacactcggccatccaggggcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttacaggtgagggctctggaaccctgcgcatcctaacactcggccatccaggggcac 620

                                                                       
Query: 421 tgttgagaaggtgttattgcgtgctcccagacagggttctgggatcagtaccagctgcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttgagaaggtgttattgcgtgctcccagacagggttctgggatcagtaccagctgcta 680

                                                                       
Query: 481 ctcaagtgtcctggaaacacaacttaggctctgctactttgtgatggtcttgaggacacc 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 ctcaagtgtcctggaaacacaacttaggctctgctgctttgtgatggtcttgaggacacc 740

                                                                       
Query: 541 ctgcatcaacatcttgatatgccttgaagtactttgctgttgcctagcctggctttaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgcatcaacatcttgatatgccttgaagtactttgctgttgcctagcctggctttaggg 800

                                       
Query: 601 aaatgtatcccctttctctcccactatg 628
           |||||||||||||||| |||||||||||
Sbjct: 801 aaatgtatcccctttccctcccactatg 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no525_a16.g1 MSMg01no525_a16.g1 CHROMAT_FILE:
MSMg01no525_a16.g1 PHD_FILE: MSMg01no525_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:30 2005
         (283 letters)



>mm_chr9_50875519_50876201
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtacatggaaacgtaacgatacttcctccctgagaaatagttctagcaaaggagaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgtacatggaaacgtaacgatacttcctccctgagaaatagttctagcaaaggagaggc 424

                                                                       
Query: 61  tagcagatgcaaaagaagggctgagaaaggaaaggatctaatttacttaagatgagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 423 tagcagatgcaaaagaagggctgagaaaggaaaggatctaatttacttaggatgagaagc 364

                                                                       
Query: 121 aagacttatgagaacacccagtggaggcttctgttgtgaacaggcacaaatgctcgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagacttatgagaacacccagtggaggcttctgttgtgaacaggcacaaatgctcgccca 304

                                                                       
Query: 181 tttcctgtgtagtcggctgtgggagcctggactatgctgacagttactctagcagccacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttcctgtgtagtcggctgtgggagcctggactatgctgacagttactctagcagccacg 244

                                                      
Query: 241 ggagattatttcttagagtttaaagaaacatactaatgacaag 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggagattatttcttagagtttaaagaaacatactaatgacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)