BAC Information

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BAC

Clone NameMSMg01-525E11
Chromosome9 (Build37)
Map Location 16,027,737 - 16,028,172
singlet/doubletsinglet
Overlap geneFat3
Upstream gene2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b
Downstream geneEG434373, LOC100040074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525E11.T7 (MSMg01no525_e11.b1)MSMg01-525E11.TJ (MSMg01no525_e11.g1)
ACCAG595153AG595154
length749763
length of high quality
(start - end)
627 (61 - 687)574 (67 - 640)
definitionCHROMAT_FILE: MSMg01no525_e11.b1 PHD_FILE: MSMg01no525_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:50 2005CHROMAT_FILE: MSMg01no525_e11.g1 PHD_FILE: MSMg01no525_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGA
AATTCTCAGGCACATGGATGAAACTAAAAAATATCATCCTGAGTGAAGTA
ACACAATCACAAAAGAACATACATGGTATTCACTCATGATAAGTGGATAT
TAGCCCCAAAGCTCCAAATACTGAAGATACAATTGCAGACCACATGAAGT
CCAAGAAGAAGGAAGACCAAAGTGTGGGTGCTTTGGTCCTTCTTAGAAAG
AGTAACAAAATACTCACGGGAGCAAATATGGAGATAAAGTATAGACACTG
AAGGAAAGGCCATTGAGACACTGTCCCACCTGGGGATTTGTTCCATATAC
AGTTACCAGACCAAGGCAATATTGTGGATGCCAAGAAGTACATGCTGACA
GGCGCCAGATGTAGCTGTCTCCTGAGATGCCTTGACAGAGCCTTACATAT
ACAGAGGTGGATGCTCACAGCCAATTGTTGTACTGAGCACAGGGTCCACA
ATAAAGGAGATAGAGAAAGGACTGAAGGAGTTGAAGGGGTTTGTAACTCC
ATAGGAAGAACAACAATATCAACCAACCAGATCCCCCAGAGTTCCTAGGA
ACTAAGCCATCAACCAAGGAGTACTCATGGCTCTAGCTGCATATGTAGCA
GATGACTGCCTTGTCAGGCATCAATGGGAGGAGAGGTCCTTGGTCCCATG
AAGGTTCAATATATGCCCCCATGTAGGGGAACTGATGGCAGGGAGGTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAACAAGGGCTAGGAATATCATTTAGTGATAAA
GCGCCTGCCATGGAAACATGAGGGTCTGTGTTCAAAACTCCAGCATTGAT
GTCTAACATCTGAGGATGGTTGCACACAACTGCCAAGGAAGCAGATCCCT
GGGCATCCCTGGCCCGTCAGGCTAGCCAGTGATTTGACACTGTTCAATGA
AAGACCTAGTAAGAAATCAAAACATAAGCAAGACAGCCATCTCTAACTTT
TGTCTGGCACAAATGTGTACACAGATGCACATGTACACACAACATACACA
CAGAGAGAAAGATAGGGAGAGAAAGGGGGAAGAGGAGAGACAAAGAGACA
GAGAACATTGCACACATAAAAAACTTACTCTGCTTAGAATATCTGAAGGC
AAAGATCTGGTTCAAAGTGTCTTGGTCAATAATAGAGCTTTGTAGACTAA
TGTTGGACTTCAGATTTTAACAGAGGAGGACTGCAGAAGTGTTAGGTGAA
GGTACAAAATAATGAGGAGAACATATGTGTCTTTTCTGAGAGCACACAGC
ATCCACCTTTTATTTTCAAAATCCCACCTTAAGTGTGAACAATGGTGTCA
TCATTCCTAAAGAATGACTGAAGGAAATGAGGGTCACGGATCTAAATAGT
TAGAAGTCGTCCCTAAGTTGCCGTTATTAGAATCCAAAACTGAATCTATC
GATCCCAGATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_e11.g1 MSMg01no525_e11.g1 CHROMAT_FILE:
MSMg01no525_e11.g1 PHD_FILE: MSMg01no525_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:50 2005
         (574 letters)



>mm_chr9_16027199_16028172
          Length = 974

 Score =  820 bits (424), Expect = 0.0
 Identities = 433/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 139 atccctggcccgtcaggctagccagtgatttgacactgttcaatgaaagacctagtaaga 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 atccctggcccgtcaggctagccagtgatttgacactgttcaatgaaagacctagtaaga 915

                                                                       
Query: 199 aatcaaaacataagcaagacagccatctctaacttttgtctggcacaaatgtgtacacag 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 aatcaaaacataagcaagacagccatctctaacttttgtctggcacaaatgtgtacacag 855

                                                                       
Query: 259 atgcacatgtacacacaacatacacacagagagaaagatagggagagaaagggggaagag 318
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atgcacgtgtacacacaacatacacacagagagaaagatagggagagaaagggggaagag 795

                                                                       
Query: 319 gagagacaaagagacagagaacattgcacacataaaaaacttactctgcttagaatatct 378
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 794 gagagacaaagagacagagaacattgcccgcataaaaaacttactctgcttagaatatct 735

                                                                       
Query: 379 gaaggcaaagatctggttcaaagtgtcttggtcaataatagagctttgtagactaatgtt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaaggcaaagatctggttcaaagtgtcttggtcaataatagagctttgtagactaatgtt 675

                                                                       
Query: 439 ggacttcagattttaacagaggaggactgcagaagtgttaggtgaaggtacaaaataatg 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ggacttcagattttaacagaggaggactgcagaagtgttaggtgaaggtacaaaataatg 615

                                                                       
Query: 499 aggagaacatatgtgtcttttctgagagcacacagcatccaccttttattttcaaaatcc 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aggagaacatatgtgtcttttctgagagcacacagcatccaccttttattttcaaaatcc 555

                           
Query: 559 caccttaagtgtgaac 574
           ||||||||||||||||
Sbjct: 554 caccttaagtgtgaac 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)